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2V5J
Biol. Unit 1
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Asym.Unit (99 KB)
Biol.Unit 1 (272 KB)
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(1)
Title
:
APO CLASS II ALDOLASE HPCH
Authors
:
D. Rea, V. Fulop, T. D. H. Bugg, D. I. Roper
Date
:
05 Jul 07 (Deposition) - 02 Oct 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Lyase, Class Ii Aldolase, Homoprotocatechuate, Aromatic Degradation, Aromatic Hydrocarbons Catabolism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Rea, V. Fulop, T. D. H. Bugg, D. I. Roper
Structure And Mechanism Of Hpch: A Metal Ion Dependent Class Ii Aldolase From The Homoprotocatechuate Degradation Pathway Of Escherichia Coli.
J. Mol. Biol. V. 373 866 2007
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Hetero Components
(2, 21)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
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No.
Name
Count
Type
Full Name
1
GOL
15
Ligand/Ion
GLYCEROL
2
PO4
6
Ligand/Ion
PHOSPHATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:6 , LYS A:10 , ARG A:109 , GLU A:164 , GLY A:165 , ASP A:167
BINDING SITE FOR RESIDUE PO4 A1260
2
AC2
SOFTWARE
LYS B:6 , LYS B:10 , ARG B:109 , GLU B:164 , ASP B:167 , HOH B:2141
BINDING SITE FOR RESIDUE PO4 B1253
3
AC3
SOFTWARE
SER A:24 , SER A:25 , TYR A:26 , HOH A:2031 , HOH A:2266 , SER B:23 , GLN B:51 , LEU B:54 , GOL B:1254
BINDING SITE FOR RESIDUE GOL A1261
4
AC4
SOFTWARE
SER A:23 , GLN A:51 , LEU A:54 , GOL A:1261 , SER B:24 , SER B:25 , TYR B:26 , HOH B:2035 , HOH B:2037
BINDING SITE FOR RESIDUE GOL B1254
5
AC5
SOFTWARE
ALA A:0 , GLY A:86 , GLN A:88 , ALA A:125 , ARG A:127 , HOH A:2167 , HOH A:2267 , HOH A:2268
BINDING SITE FOR RESIDUE GOL A1262
6
AC6
SOFTWARE
ALA B:0 , GLY B:86 , GLN B:88 , ALA B:125 , ARG B:127 , HOH B:2242
BINDING SITE FOR RESIDUE GOL B1255
7
AC7
SOFTWARE
LEU A:9 , LYS A:10 , ARG A:203 , GLY A:206 , HOH A:2198 , HOH A:2269
BINDING SITE FOR RESIDUE GOL A1263
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_HpcH_HpaI_2v5jB01 (B:15-242)
1b: PFAM_HpcH_HpaI_2v5jB02 (B:15-242)
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Clan
:
PK_TIM
(63)
Family
:
HpcH_HpaI
(8)
Escherichia coli
(2)
1a
HpcH_HpaI-2v5jB01
B:15-242
1b
HpcH_HpaI-2v5jB02
B:15-242
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