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Getting 'Exon' information from database.
2V55
Asym. Unit
Info
Asym.Unit (402 KB)
Biol.Unit 1 (197 KB)
Biol.Unit 2 (200 KB)
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(1)
Title
:
MECHANISM OF MULTI-SITE PHOSPHORYLATION FROM A ROCK-I:RHOE COMPLEX STRUCTURE
Authors
:
D. Komander, R. Garg, P. T. C. Wan, A. J. Ridley, D. Barford
Date
:
01 Oct 08 (Deposition) - 04 Nov 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Serine/Threonine-Protein Kinase, Rhoe, Zinc, Kinase, Rock-I, Membrane, Apoptosis, Cytoplasm, G-Proteins, Methylation, Zinc-Finger, Nucleotide-Binding, Phorbol-Ester Binding, Atp-Binding, Prenylation, Transferase, Lipoprotein, Multi-Site Phosphorylation, Coiled Coil, Gtp-Binding, Polymorphism, Stress Fibres, Metal-Binding, Phosphoprotein, Golgi Apparatus
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Komander, R. Garg, P. T. C. Wan, A. J. Ridley, D. Barford
Mechanism Of Multi-Site Phosphorylation From A Rock-I:Rhoe Complex Structure.
Embo J. V. 27 3175 2008
[
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
2a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
2b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
4a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ANP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
GTP
2
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
3
MG
4
Ligand/Ion
MAGNESIUM ION
4
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:86 , LYS A:105 , VAL A:137 , MET A:153 , GLU A:154 , MET A:156 , ASP A:160 , ASP A:198 , LYS A:200 , ASP A:202 , ASP A:216 , PHE A:368 , MG A:1481
BINDING SITE FOR RESIDUE ANP A1480
2
AC2
SOFTWARE
ASN A:203 , ANP A:1480
BINDING SITE FOR RESIDUE MG A1481
3
AC3
SOFTWARE
SER B:32 , GLN B:33 , CYS B:34 , GLY B:35 , LYS B:36 , THR B:37 , ALA B:38 , TYR B:52 , PRO B:54 , THR B:55 , THR B:78 , GLY B:80 , LYS B:136 , ASP B:138 , LEU B:139 , ALA B:179 , LEU B:180 , MG B:1202
BINDING SITE FOR RESIDUE GTP B1201
4
AC4
SOFTWARE
THR B:37 , VAL B:53 , THR B:55 , GTP B:1201
BINDING SITE FOR RESIDUE MG B1202
5
AC5
SOFTWARE
ALA C:86 , LYS C:105 , VAL C:137 , MET C:153 , GLU C:154 , MET C:156 , ASP C:160 , ASP C:198 , LYS C:200 , ASP C:202 , ASP C:216 , PHE C:368 , MG C:1481
BINDING SITE FOR RESIDUE ANP C1480
6
AC6
SOFTWARE
ASN C:203 , ANP C:1480
BINDING SITE FOR RESIDUE MG C1481
7
AC7
SOFTWARE
SER D:32 , GLN D:33 , CYS D:34 , GLY D:35 , LYS D:36 , THR D:37 , ALA D:38 , TYR D:52 , PRO D:54 , THR D:55 , THR D:78 , GLY D:80 , LYS D:136 , ASP D:138 , LEU D:139 , ALA D:179 , LEU D:180 , MG D:1202
BINDING SITE FOR RESIDUE GTP D1201
8
AC8
SOFTWARE
THR D:37 , VAL D:53 , THR D:55 , GTP D:1201
BINDING SITE FOR RESIDUE MG D1202
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041055 (S108N, chain A/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041055
S
108
N
ROCK1_HUMAN
Polymorphism
55811609
A/C
S
108
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:82-105,C:82-105)
2: PROTEIN_KINASE_ST (A:194-206,C:194-206)
3: AGC_KINASE_CTER (A:341-404,C:341-404)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
ROCK1_HUMAN
82-105
2
A:82-105
C:82-105
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
ROCK1_HUMAN
194-206
2
A:194-206
C:194-206
3
AGC_KINASE_CTER
PS51285
AGC-kinase C-terminal domain profile.
ROCK1_HUMAN
341-409
2
A:341-404
C:341-404
[
close PROSITE info
]
Exons
(16, 32)
Info
All Exons
Exon 1.3c (B:20-50 | D:19-50)
Exon 1.5b (B:51-80 | D:51-80)
Exon 1.7c (B:80-116 | D:80-116)
Exon 1.8c (B:117-161 | D:117-161)
Exon 1.9e (B:162-200 | D:162-200)
Exon 2.1 (A:6-31 | C:6-31)
Exon 2.2 (A:32-59 | C:32-59)
Exon 2.3 (A:59-92 | C:59-92)
Exon 2.4 (A:93-138 | C:93-138)
Exon 2.5 (A:139-197 | C:139-197)
Exon 2.6 (A:197-225 | C:197-225)
Exon 2.7 (A:226-274 | C:226-274)
Exon 2.8 (A:274-320 | C:274-320)
Exon 2.9 (A:320-351 | C:320-351)
Exon 2.10 (A:351-404 (gaps) | C:351-404 (gaps...)
Exon 2.11 (A:404-404 | C:404-404)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.3c
02: Boundary 1.3c/1.5b
03: Boundary 1.5b/1.7c
04: Boundary 1.7c/1.8c
05: Boundary 1.8c/1.9e
06: Boundary 1.9e/-
07: Boundary -/2.1
08: Boundary 2.1/2.2
09: Boundary 2.2/2.3
10: Boundary 2.3/2.4
11: Boundary 2.4/2.5
12: Boundary 2.5/2.6
13: Boundary 2.6/2.7
14: Boundary 2.7/2.8
15: Boundary 2.8/2.9
16: Boundary 2.9/2.10
17: Boundary 2.10/2.11
18: Boundary 2.11/2.12
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3c
ENST00000375734
3c
ENSE00001513357
chr2:
151344181-151343782
400
RND3_HUMAN
1-50
50
2
B:20-50
D:19-50
31
32
1.5b
ENST00000375734
5b
ENSE00000777716
chr2:
151343295-151343208
88
RND3_HUMAN
51-80
30
2
B:51-80
D:51-80
30
30
1.7c
ENST00000375734
7c
ENSE00002146645
chr2:
151331498-151331389
110
RND3_HUMAN
80-116
37
2
B:80-116
D:80-116
37
37
1.8c
ENST00000375734
8c
ENSE00001661670
chr2:
151328275-151328141
135
RND3_HUMAN
117-161
45
2
B:117-161
D:117-161
45
45
1.9e
ENST00000375734
9e
ENSE00001070099
chr2:
151326752-151324709
2044
RND3_HUMAN
162-244
83
2
B:162-200
D:162-200
39
39
2.1
ENST00000399799
1
ENSE00001540250
chr18:
18691812-18690779
1034
ROCK1_HUMAN
1-31
31
2
A:6-31
C:6-31
26
26
2.2
ENST00000399799
2
ENSE00000666550
chr18:
18650574-18650493
82
ROCK1_HUMAN
32-59
28
2
A:32-59
C:32-59
28
28
2.3
ENST00000399799
3
ENSE00000666552
chr18:
18629841-18629741
101
ROCK1_HUMAN
59-92
34
2
A:59-92
C:59-92
34
34
2.4
ENST00000399799
4
ENSE00000666554
chr18:
18629190-18629053
138
ROCK1_HUMAN
93-138
46
2
A:93-138
C:93-138
46
46
2.5
ENST00000399799
5
ENSE00001106179
chr18:
18625428-18625253
176
ROCK1_HUMAN
139-197
59
2
A:139-197
C:139-197
59
59
2.6
ENST00000399799
6
ENSE00001106157
chr18:
18624147-18624063
85
ROCK1_HUMAN
197-225
29
2
A:197-225
C:197-225
29
29
2.7
ENST00000399799
7
ENSE00001106151
chr18:
18622670-18622526
145
ROCK1_HUMAN
226-274
49
2
A:226-274
C:226-274
49
49
2.8
ENST00000399799
8
ENSE00001106132
chr18:
18622196-18622058
139
ROCK1_HUMAN
274-320
47
2
A:274-320
C:274-320
47
47
2.9
ENST00000399799
9
ENSE00001106127
chr18:
18619524-18619433
92
ROCK1_HUMAN
320-351
32
2
A:320-351
C:320-351
32
32
2.10
ENST00000399799
10
ENSE00001205106
chr18:
18608896-18608737
160
ROCK1_HUMAN
351-404
54
2
A:351-404 (gaps)
C:351-404 (gaps)
54
54
2.11
ENST00000399799
11
ENSE00000666570
chr18:
18603641-18603581
61
ROCK1_HUMAN
404-424
21
2
A:404-404
C:404-404
1
1
2.12
ENST00000399799
12
ENSE00000666572
chr18:
18600200-18600112
89
ROCK1_HUMAN
425-454
30
0
-
-
2.13
ENST00000399799
13
ENSE00000666574
chr18:
18595440-18595392
49
ROCK1_HUMAN
454-470
17
0
-
-
2.14
ENST00000399799
14
ENSE00001106120
chr18:
18588155-18588020
136
ROCK1_HUMAN
471-516
46
0
-
-
2.15
ENST00000399799
15
ENSE00000666578
chr18:
18586751-18586660
92
ROCK1_HUMAN
516-546
31
0
-
-
2.16
ENST00000399799
16
ENSE00000666579
chr18:
18586558-18586312
247
ROCK1_HUMAN
547-629
83
0
-
-
2.17
ENST00000399799
17
ENSE00000948798
chr18:
18572898-18572792
107
ROCK1_HUMAN
629-664
36
0
-
-
2.18
ENST00000399799
18
ENSE00000948799
chr18:
18571287-18571137
151
ROCK1_HUMAN
665-715
51
0
-
-
2.19
ENST00000399799
19
ENSE00000666582
chr18:
18567071-18566911
161
ROCK1_HUMAN
715-768
54
0
-
-
2.20
ENST00000399799
20
ENSE00000666583
chr18:
18564496-18564312
185
ROCK1_HUMAN
769-830
62
0
-
-
2.21
ENST00000399799
21
ENSE00000666584
chr18:
18562793-18562724
70
ROCK1_HUMAN
830-853
24
0
-
-
2.22
ENST00000399799
22
ENSE00000666585
chr18:
18559965-18559871
95
ROCK1_HUMAN
854-885
32
0
-
-
2.23
ENST00000399799
23
ENSE00001106143
chr18:
18550474-18550309
166
ROCK1_HUMAN
885-940
56
0
-
-
2.24
ENST00000399799
24
ENSE00000948802
chr18:
18549169-18549076
94
ROCK1_HUMAN
941-972
32
0
-
-
2.25
ENST00000399799
25
ENSE00000948803
chr18:
18548821-18548733
89
ROCK1_HUMAN
972-1001
30
0
-
-
2.26
ENST00000399799
26
ENSE00000948804
chr18:
18547901-18547713
189
ROCK1_HUMAN
1002-1064
63
0
-
-
2.27
ENST00000399799
27
ENSE00001133063
chr18:
18547037-18546878
160
ROCK1_HUMAN
1065-1118
54
0
-
-
2.28
ENST00000399799
28
ENSE00001133053
chr18:
18540167-18540097
71
ROCK1_HUMAN
1118-1141
24
0
-
-
2.29
ENST00000399799
29
ENSE00001106113
chr18:
18539889-18539801
89
ROCK1_HUMAN
1142-1171
30
0
-
-
2.30
ENST00000399799
30
ENSE00001659208
chr18:
18535206-18535128
79
ROCK1_HUMAN
1171-1197
27
0
-
-
2.31
ENST00000399799
31
ENSE00001592636
chr18:
18535005-18534744
262
ROCK1_HUMAN
1198-1285
88
0
-
-
2.32
ENST00000399799
32
ENSE00001652301
chr18:
18533746-18533539
208
ROCK1_HUMAN
1285-1354
70
0
-
-
2.33
ENST00000399799
33
ENSE00001540219
chr18:
18531348-18529701
1648
ROCK1_HUMAN
1354-1354
1
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_2v55A01 (A:6-159,A:359-404)
1b: CATH_2v55C01 (C:6-159,C:359-404)
2a: CATH_2v55D00 (D:19-200)
2b: CATH_2v55B00 (B:20-200)
3a: CATH_2v55A02 (A:160-358)
3b: CATH_2v55C02 (C:160-358)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
2v55A01
A:6-159,A:359-404
1b
2v55C01
C:6-159,C:359-404
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
2a
2v55D00
D:19-200
2b
2v55B00
B:20-200
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
3a
2v55A02
A:160-358
3b
2v55C02
C:160-358
[
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Ras_2v55D01 (D:25-199)
1b: PFAM_Ras_2v55D02 (D:25-199)
2a: PFAM_Pkinase_2v55C01 (C:76-338)
2b: PFAM_Pkinase_2v55C02 (C:76-338)
3a: PFAM_Pkinase_C_2v55C03 (C:358-402)
3b: PFAM_Pkinase_C_2v55C04 (C:358-402)
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Clans
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(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Ras
(176)
Homo sapiens (Human)
(141)
1a
Ras-2v55D01
D:25-199
1b
Ras-2v55D02
D:25-199
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
2a
Pkinase-2v55C01
C:76-338
2b
Pkinase-2v55C02
C:76-338
Clan
:
no clan defined [family: Pkinase_C]
(22)
Family
:
Pkinase_C
(22)
Homo sapiens (Human)
(21)
3a
Pkinase_C-2v55C03
C:358-402
3b
Pkinase_C-2v55C04
C:358-402
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