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2V50
Biol. Unit 2
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Asym.Unit (963 KB)
Biol.Unit 1 (482 KB)
Biol.Unit 2 (480 KB)
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(1)
Title
:
THE MISSING PART OF THE BACTERIAL MEXAB-OPRM SYSTEM: STRUCTURAL DETERMINATION OF THE MULTIDRUG EXPORTER MEXB
Authors
:
G. Sennhauser, M. A. Bukowska, M. G. Gruetter
Date
:
01 Oct 08 (Deposition) - 19 May 09 (Release) - 27 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Multidrug Resistance Protein, Ddm, Rnd, Membrane, Detergent, Transport, Cell Membrane, Transmembrane, Membrane Protein, Cell Inner Membrane, Antibiotic Resistance, Drug-Efflux Pump, Transport Protein
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Gene Ontology, PubMed, Web (Google)
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Reference
:
G. Sennhauser, M. A. Bukowska, C. Briand, M. G. Gruetter
Crystal Structure Of The Multidrug Exporter Mexb From Pseudomonas Aeruginosa.
J. Mol. Biol. V. 389 134 2009
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: DODECYL-BETA-D-MALTOSIDE (LMTa)
1b: DODECYL-BETA-D-MALTOSIDE (LMTb)
1c: DODECYL-BETA-D-MALTOSIDE (LMTc)
1d: DODECYL-BETA-D-MALTOSIDE (LMTd)
1e: DODECYL-BETA-D-MALTOSIDE (LMTe)
1f: DODECYL-BETA-D-MALTOSIDE (LMTf)
1g: DODECYL-BETA-D-MALTOSIDE (LMTg)
1h: DODECYL-BETA-D-MALTOSIDE (LMTh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
LMT
4
Ligand/Ion
DODECYL-BETA-D-MALTOSIDE
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Sites
(4, 4)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
4: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
TRP D:13 , LEU D:17 , ARG D:363 , THR D:495 , LYS D:498
BINDING SITE FOR RESIDUE LMT D2026
2
AC5
SOFTWARE
PHE E:386 , LEU E:454 , ALA E:457 , PHE E:458 , ARG E:468 , ILE E:472 , LMT E:2032
BINDING SITE FOR RESIDUE LMT E2031
3
AC6
SOFTWARE
LEU D:25 , LEU D:28 , LEU E:454 , PHE E:458 , SER E:870 , GLN E:871 , ALA E:874 , LEU E:875 , LEU E:878 , VAL E:882 , LMT E:2031
BINDING SITE FOR RESIDUE LMT E2032
4
AC7
SOFTWARE
GLN E:46 , VAL E:47 , SER E:48 , THR E:89 , GLN E:125 , GLY E:126 , GLY E:179 , SER E:180 , ARG E:620
BINDING SITE FOR RESIDUE LMT E2033
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(6, 48)
Info
all CATH domains
1a: CATH_2v50A02 (A:38-132,A:812-819)
1b: CATH_2v50B02 (B:38-132,B:812-819)
1c: CATH_2v50F06 (F:569-670)
1d: CATH_2v50E06 (E:569-668)
1e: CATH_2v50C02 (C:38-132,C:812-819)
1f: CATH_2v50D02 (D:38-132,D:812-819)
1g: CATH_2v50E02 (E:38-132,E:812-819)
1h: CATH_2v50F02 (F:38-132,F:812-819)
1i: CATH_2v50A06 (A:569-670)
1j: CATH_2v50B06 (B:569-670)
1k: CATH_2v50C06 (C:569-670)
1l: CATH_2v50D06 (D:569-676)
2a: CATH_2v50A03 (A:133-179,A:276-328)
2b: CATH_2v50B03 (B:133-179,B:276-328)
2c: CATH_2v50C03 (C:133-179,C:276-328)
2d: CATH_2v50D03 (D:133-179,D:276-328)
2e: CATH_2v50E03 (E:133-179,E:276-328)
2f: CATH_2v50F03 (F:133-179,F:276-329)
3a: CATH_2v50A07 (A:671-722,A:820-868)
3b: CATH_2v50B07 (B:671-722,B:820-867)
3c: CATH_2v50C07 (C:671-722,C:820-867)
3d: CATH_2v50F07 (F:671-722,F:820-867)
3e: CATH_2v50E07 (E:681-722,E:820-867)
3f: CATH_2v50D07 (D:677-722,D:820-868)
4a: CATH_2v50A08 (A:723-811)
4b: CATH_2v50B08 (B:723-811)
4c: CATH_2v50F04 (F:180-275)
4d: CATH_2v50D04 (D:180-275)
4e: CATH_2v50C08 (C:723-811)
4f: CATH_2v50D08 (D:723-811)
4g: CATH_2v50E08 (E:723-811)
4h: CATH_2v50F08 (F:723-811)
4i: CATH_2v50A04 (A:180-275)
4j: CATH_2v50B04 (B:180-275)
4k: CATH_2v50C04 (C:180-275)
4l: CATH_2v50E04 (E:180-275)
5a: CATH_2v50B05 (B:515-568,B:868-1030)
5b: CATH_2v50C05 (C:515-568,C:868-1030)
5c: CATH_2v50F05 (F:515-568,F:868-1030)
5d: CATH_2v50A05 (A:515-568,A:869-1025)
5e: CATH_2v50D05 (D:515-568,D:869-1025)
5f: CATH_2v50E05 (E:515-568,E:868-1030)
6a: CATH_2v50D01 (D:1-37,D:329-514)
6b: CATH_2v50A01 (A:4-37,A:329-514)
6c: CATH_2v50F01 (F:1-37,F:330-514)
6d: CATH_2v50B01 (B:1-37,B:329-514)
6e: CATH_2v50C01 (C:1-37,C:329-514)
6f: CATH_2v50E01 (E:1-37,E:329-514)
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(
)
(
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)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
Multidrug efflux transporter AcrB pore domain
(27)
Pseudomonas aeruginosa pa01. Organism_taxid: 208964.
(1)
1a
2v50A02
A:38-132,A:812-819
1b
2v50B02
B:38-132,B:812-819
1c
2v50F06
F:569-670
1d
2v50E06
E:569-668
1e
2v50C02
C:38-132,C:812-819
1f
2v50D02
D:38-132,D:812-819
1g
2v50E02
E:38-132,E:812-819
1h
2v50F02
F:38-132,F:812-819
1i
2v50A06
A:569-670
1j
2v50B06
B:569-670
1k
2v50C06
C:569-670
1l
2v50D06
D:569-676
Homologous Superfamily
:
Multidrug efflux transporter AcrB pore domain like
(27)
Pseudomonas aeruginosa pa01. Organism_taxid: 208964.
(1)
2a
2v50A03
A:133-179,A:276-328
2b
2v50B03
B:133-179,B:276-328
2c
2v50C03
C:133-179,C:276-328
2d
2v50D03
D:133-179,D:276-328
2e
2v50E03
E:133-179,E:276-328
2f
2v50F03
F:133-179,F:276-329
Homologous Superfamily
:
Multidrug efflux transporter AcrB pore domain
(27)
Pseudomonas aeruginosa pa01. Organism_taxid: 208964.
(1)
3a
2v50A07
A:671-722,A:820-868
3b
2v50B07
B:671-722,B:820-867
3c
2v50C07
C:671-722,C:820-867
3d
2v50F07
F:671-722,F:820-867
3e
2v50E07
E:681-722,E:820-867
3f
2v50D07
D:677-722,D:820-868
Topology
:
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
(27)
Homologous Superfamily
:
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
(27)
Pseudomonas aeruginosa pa01. Organism_taxid: 208964.
(1)
4a
2v50A08
A:723-811
4b
2v50B08
B:723-811
4c
2v50F04
F:180-275
4d
2v50D04
D:180-275
4e
2v50C08
C:723-811
4f
2v50D08
D:723-811
4g
2v50E08
E:723-811
4h
2v50F08
F:723-811
4i
2v50A04
A:180-275
4j
2v50B04
B:180-275
4k
2v50C04
C:180-275
4l
2v50E04
E:180-275
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
(27)
Homologous Superfamily
:
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
(27)
Pseudomonas aeruginosa pa01. Organism_taxid: 208964.
(1)
5a
2v50B05
B:515-568,B:868-1030
5b
2v50C05
C:515-568,C:868-1030
5c
2v50F05
F:515-568,F:868-1030
5d
2v50A05
A:515-568,A:869-1025
5e
2v50D05
D:515-568,D:869-1025
5f
2v50E05
E:515-568,E:868-1030
Architecture
:
Up-down Bundle
(3216)
Topology
:
Multidrug efflux transporter AcrB transmembrane fold
(27)
Homologous Superfamily
:
Multidrug efflux transporter AcrB transmembrane domain
(27)
Pseudomonas aeruginosa pa01. Organism_taxid: 208964.
(1)
6a
2v50D01
D:1-37,D:329-514
6b
2v50A01
A:4-37,A:329-514
6c
2v50F01
F:1-37,F:330-514
6d
2v50B01
B:1-37,B:329-514
6e
2v50C01
C:1-37,C:329-514
6f
2v50E01
E:1-37,E:329-514
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_ACR_tran_2v50F01 (F:1-1028)
1b: PFAM_ACR_tran_2v50F02 (F:1-1028)
1c: PFAM_ACR_tran_2v50F03 (F:1-1028)
1d: PFAM_ACR_tran_2v50F04 (F:1-1028)
1e: PFAM_ACR_tran_2v50F05 (F:1-1028)
1f: PFAM_ACR_tran_2v50F06 (F:1-1028)
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Organisms
(
)
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)
Clan
:
RND_permease
(19)
Family
:
ACR_tran
(19)
Pseudomonas aeruginosa
(1)
1a
ACR_tran-2v50F01
F:1-1028
1b
ACR_tran-2v50F02
F:1-1028
1c
ACR_tran-2v50F03
F:1-1028
1d
ACR_tran-2v50F04
F:1-1028
1e
ACR_tran-2v50F05
F:1-1028
1f
ACR_tran-2v50F06
F:1-1028
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