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2V4D
Asym. Unit
Info
Asym.Unit (597 KB)
Biol.Unit 1 (582 KB)
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(1)
Title
:
RE-REFINEMENT OF MEXA ADAPTOR PROTEIN
Authors
:
M. F. Symmons, E. Bokma, E. Koronakis, C. Hughes, V. Koronakis
Date
:
18 Sep 08 (Deposition) - 14 Apr 09 (Release) - 19 May 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M (1x)
Keywords
:
Membrane Protein, Transport Protein, Cell Inner Membrane, Mexa, Membrane, Palmitate, Transport, Lipoprotein, Antibiotic Resistance, Antibiotic Efflux Pump, Coiled Coil, Cell Membrane, Inner Membrane, Periplasmic Adaptor Protein
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Reference
:
M. F. Symmons, E. Bokma, E. Koronakis, C. Hughes, V. Koronakis
The Assembled Structure Of A Complete Tripartite Bacterial Multidrug Efflux Pump.
Proc. Natl. Acad. Sci. Usa V. 106 7173 2009
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Hetero Components
(1, 16)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
1m: SULFATE ION (SO4m)
1n: SULFATE ION (SO4n)
1o: SULFATE ION (SO4o)
1p: SULFATE ION (SO4p)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
16
Ligand/Ion
SULFATE ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:147 , SER B:228
BINDING SITE FOR RESIDUE SO4 A1260
02
AC2
SOFTWARE
GLY B:146 , ARG B:147 , VAL C:227 , SER C:228
BINDING SITE FOR RESIDUE SO4 B1340
03
AC3
SOFTWARE
GLY C:146 , ARG C:147 , SER D:228
BINDING SITE FOR RESIDUE SO4 C1340
04
AC4
SOFTWARE
GLY D:146 , ARG D:147 , VAL E:227 , SER E:228
BINDING SITE FOR RESIDUE SO4 E1340
05
AC5
SOFTWARE
GLY E:146 , ARG E:147 , THR E:166 , VAL F:227 , SER F:228
BINDING SITE FOR RESIDUE SO4 E1341
06
AC6
SOFTWARE
GLY F:146 , ARG F:147
BINDING SITE FOR RESIDUE SO4 F1340
07
AC7
SOFTWARE
GLY G:146 , ARG G:147
BINDING SITE FOR RESIDUE SO4 G1340
08
AC8
SOFTWARE
VAL G:227 , SER G:228 , GLY H:146 , ARG H:147
BINDING SITE FOR RESIDUE SO4 H1340
09
AC9
SOFTWARE
VAL H:227 , SER H:228 , GLY I:146 , ARG I:147
BINDING SITE FOR RESIDUE SO4 I1340
10
BC1
SOFTWARE
VAL I:227 , SER I:228 , GLY J:146 , ARG J:147
BINDING SITE FOR RESIDUE SO4 J1340
11
BC2
SOFTWARE
VAL J:227 , SER J:228 , GLY K:146 , ARG K:147
BINDING SITE FOR RESIDUE SO4 K1340
12
BC3
SOFTWARE
SER K:228 , GLY L:146 , ARG L:147
BINDING SITE FOR RESIDUE SO4 L1340
13
BC4
SOFTWARE
VAL L:227 , SER L:228 , GLY M:146 , ARG M:147
BINDING SITE FOR RESIDUE SO4 M1340
14
BC5
SOFTWARE
ARG F:54 , THR F:151 , GLU F:152
BINDING SITE FOR RESIDUE SO4 F1341
15
BC6
SOFTWARE
ARG A:54 , LYS A:57 , GLU A:58 , TYR B:174
BINDING SITE FOR RESIDUE SO4 A1261
16
BC7
SOFTWARE
ARG B:54 , LYS B:57 , GLU B:58 , ARG C:39 , TYR C:174
BINDING SITE FOR RESIDUE SO4 B1341
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(1, 13)
Info
all PFAM domains
1a: PFAM_HlyD_2v4dM01 (M:39-323)
1b: PFAM_HlyD_2v4dM02 (M:39-323)
1c: PFAM_HlyD_2v4dM03 (M:39-323)
1d: PFAM_HlyD_2v4dM04 (M:39-323)
1e: PFAM_HlyD_2v4dM05 (M:39-323)
1f: PFAM_HlyD_2v4dM06 (M:39-323)
1g: PFAM_HlyD_2v4dM07 (M:39-323)
1h: PFAM_HlyD_2v4dM08 (M:39-323)
1i: PFAM_HlyD_2v4dM09 (M:39-323)
1j: PFAM_HlyD_2v4dM10 (M:39-323)
1k: PFAM_HlyD_2v4dM11 (M:39-323)
1l: PFAM_HlyD_2v4dM12 (M:39-323)
1m: PFAM_HlyD_2v4dM13 (M:39-323)
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Clans
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Clan
:
Hybrid
(58)
Family
:
HlyD
(3)
Pseudomonas aeruginosa
(3)
1a
HlyD-2v4dM01
M:39-323
1b
HlyD-2v4dM02
M:39-323
1c
HlyD-2v4dM03
M:39-323
1d
HlyD-2v4dM04
M:39-323
1e
HlyD-2v4dM05
M:39-323
1f
HlyD-2v4dM06
M:39-323
1g
HlyD-2v4dM07
M:39-323
1h
HlyD-2v4dM08
M:39-323
1i
HlyD-2v4dM09
M:39-323
1j
HlyD-2v4dM10
M:39-323
1k
HlyD-2v4dM11
M:39-323
1l
HlyD-2v4dM12
M:39-323
1m
HlyD-2v4dM13
M:39-323
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Asym.Unit (597 KB)
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