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2V4A
Biol. Unit 1
Info
Asym.Unit (139 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 2 (33 KB)
Biol.Unit 3 (34 KB)
Biol.Unit 4 (35 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE SEMET-LABELED PROLYL-4 HYDROXYLASE (P4H) TYPE I FROM GREEN ALGAE CHLAMYDOMONAS REINHARDTII.
Authors
:
M. K. Koski, R. Hieta, C. Bollner, K. I. Kivirikko, J. Myllyharju, R. K.
Date
:
28 Jun 07 (Deposition) - 30 Oct 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.93
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. K. Koski, R. Hieta, C. Bollner, K. I. Kivirikko, J. Myllyharju, R. K. Wierenga
The Active Site Of An Algal Prolyl 4-Hydroxylase Has A Large Structural Plasticity.
J. Biol. Chem. V. 282 37112 2007
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: DIMETHYL SULFOXIDE (DMSa)
2b: DIMETHYL SULFOXIDE (DMSb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
4s: SELENOMETHIONINE (MSEs)
4t: SELENOMETHIONINE (MSEt)
4u: SELENOMETHIONINE (MSEu)
4v: SELENOMETHIONINE (MSEv)
4w: SELENOMETHIONINE (MSEw)
4x: SELENOMETHIONINE (MSEx)
5a: SULFATE ION (SO4a)
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No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
DMS
-1
Ligand/Ion
DIMETHYL SULFOXIDE
3
GOL
1
Ligand/Ion
GLYCEROL
4
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
5
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC7 (SOFTWARE)
3: AC9 (SOFTWARE)
4: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:178 , LYS A:237 , HOH A:2049 , HOH A:2089
BINDING SITE FOR RESIDUE CL A1250
2
AC7
SOFTWARE
ARG A:50 , PHE A:52 , VAL A:118 , TYR A:213
BINDING SITE FOR RESIDUE GOL A1251
3
AC9
SOFTWARE
LYS A:110 , GLU B:61 , HOH B:2088
BINDING SITE FOR RESIDUE DMS B1252
4
BC2
SOFTWARE
ARG A:71 , HIS A:133 , HOH A:2097 , HOH A:2098 , HOH A:2099 , MSE C:74 , THR C:96 , HIS C:133 , HIS C:135
BINDING SITE FOR RESIDUE SO4 A1252
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2v4aa_ (A:)
1b: SCOP_d2v4ac_ (C:)
1c: SCOP_d2v4ad_ (D:)
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Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
Clavaminate synthase-like
(197)
Family
:
proly-4-hydroxylase (P4H, PHD) like
(16)
Protein domain
:
automated matches
(14)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(2)
1a
d2v4aa_
A:
1b
d2v4ac_
C:
1c
d2v4ad_
D:
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (139 KB)
Header - Asym.Unit
Biol.Unit 1 (34 KB)
Header - Biol.Unit 1
Biol.Unit 2 (33 KB)
Header - Biol.Unit 2
Biol.Unit 3 (34 KB)
Header - Biol.Unit 3
Biol.Unit 4 (35 KB)
Header - Biol.Unit 4
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