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2V41
Biol. Unit 4
Info
Asym.Unit (286 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (72 KB)
Biol.Unit 3 (73 KB)
Biol.Unit 4 (73 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C45S MUTANT OF THE PEROXIREDOXIN 6 OF ARENICOLA MARINA. ORTHORHOMBIC FORM
Authors
:
A. Smeets, J. P. Declercq
Date
:
27 Jun 07 (Deposition) - 08 Apr 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Antioxidant Enzymes, Oxidoreductase, Peroxiredoxins, Arenicola Marina
(Keyword Search:
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Reference
:
A. Smeets, E. Loumaye, A. Clippe, J. F. Rees, B. Knoops, J. P. Declercq
The Crystal Structure Of The C45S Mutant Of Annelid Arenicola Marina Peroxiredoxin 6 Supports Its Assignment To The Mechanistically Typical 2- Cys Subfamily Without Any Formation Of Toroid- Shaped Decamers.
Protein Sci. V. 17 700 2008
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: BENZOIC ACID (BEZa)
1b: BENZOIC ACID (BEZb)
1c: BENZOIC ACID (BEZc)
1d: BENZOIC ACID (BEZd)
1e: BENZOIC ACID (BEZe)
1f: BENZOIC ACID (BEZf)
1g: BENZOIC ACID (BEZg)
1h: BENZOIC ACID (BEZh)
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No.
Name
Count
Type
Full Name
1
BEZ
2
Ligand/Ion
BENZOIC ACID
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Sites
(2, 2)
Info
All Sites
1: AC7 (SOFTWARE)
2: AC8 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC7
SOFTWARE
THR G:42 , PRO G:43 , VAL G:44 , SER G:45 , GLU G:117 , ARG G:128 , PRO H:187
BINDING SITE FOR RESIDUE BEZ G1222
2
AC8
SOFTWARE
PRO G:187 , THR H:42 , PRO H:43 , VAL H:44 , SER H:45 , GLU H:117 , ARG H:128
BINDING SITE FOR RESIDUE BEZ H1222
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2v41a_ (A:)
1b: SCOP_d2v41b_ (B:)
1c: SCOP_d2v41c_ (C:)
1d: SCOP_d2v41d_ (D:)
1e: SCOP_d2v41e_ (E:)
1f: SCOP_d2v41f_ (F:)
1g: SCOP_d2v41g_ (G:)
1h: SCOP_d2v41h_ (H:)
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Protein Domains
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Organisms
(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
automated matches
(46)
Arenicola marina [TaxId: 6344]
(4)
1a
d2v41a_
A:
1b
d2v41b_
B:
1c
d2v41c_
C:
1d
d2v41d_
D:
1e
d2v41e_
E:
1f
d2v41f_
F:
1g
d2v41g_
G:
1h
d2v41h_
H:
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2v41A02 (A:152-221)
1b: CATH_2v41B02 (B:152-221)
1c: CATH_2v41D02 (D:152-221)
1d: CATH_2v41E02 (E:152-221)
1e: CATH_2v41F02 (F:152-221)
1f: CATH_2v41G02 (G:152-221)
1g: CATH_2v41H02 (H:152-221)
1h: CATH_2v41C02 (C:152-217)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Antioxidant, Horf6; Chain A, domain 2
(5)
Homologous Superfamily
:
Antioxidant, Horf6; Chain A, domain2
(5)
Arenicola marina. Organism_taxid: 6344.
(1)
1a
2v41A02
A:152-221
1b
2v41B02
B:152-221
1c
2v41D02
D:152-221
1d
2v41E02
E:152-221
1e
2v41F02
F:152-221
1f
2v41G02
G:152-221
1g
2v41H02
H:152-221
1h
2v41C02
C:152-217
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Pfam Domains
(2, 16)
Info
all PFAM domains
1a: PFAM_AhpC_TSA_2v41H01 (H:5-142)
1b: PFAM_AhpC_TSA_2v41H02 (H:5-142)
1c: PFAM_AhpC_TSA_2v41H03 (H:5-142)
1d: PFAM_AhpC_TSA_2v41H04 (H:5-142)
1e: PFAM_AhpC_TSA_2v41H05 (H:5-142)
1f: PFAM_AhpC_TSA_2v41H06 (H:5-142)
1g: PFAM_AhpC_TSA_2v41H07 (H:5-142)
1h: PFAM_AhpC_TSA_2v41H08 (H:5-142)
2a: PFAM_1_cysPrx_C_2v41H09 (H:162-200)
2b: PFAM_1_cysPrx_C_2v41H10 (H:162-200)
2c: PFAM_1_cysPrx_C_2v41H11 (H:162-200)
2d: PFAM_1_cysPrx_C_2v41H12 (H:162-200)
2e: PFAM_1_cysPrx_C_2v41H13 (H:162-200)
2f: PFAM_1_cysPrx_C_2v41H14 (H:162-200)
2g: PFAM_1_cysPrx_C_2v41H15 (H:162-200)
2h: PFAM_1_cysPrx_C_2v41H16 (H:162-200)
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Clans
(
)
(
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(
)
(
)
Organisms
(
)
(
)
Clan
:
Thioredoxin
(367)
Family
:
AhpC-TSA
(28)
Arenicola marina (Lugworm) (Lumbricus marinus)
(3)
1a
AhpC-TSA-2v41H01
H:5-142
1b
AhpC-TSA-2v41H02
H:5-142
1c
AhpC-TSA-2v41H03
H:5-142
1d
AhpC-TSA-2v41H04
H:5-142
1e
AhpC-TSA-2v41H05
H:5-142
1f
AhpC-TSA-2v41H06
H:5-142
1g
AhpC-TSA-2v41H07
H:5-142
1h
AhpC-TSA-2v41H08
H:5-142
Clan
:
no clan defined [family: 1-cysPrx_C]
(19)
Family
:
1-cysPrx_C
(19)
Arenicola marina (Lugworm) (Lumbricus marinus)
(3)
2a
1-cysPrx_C-2v41H09
H:162-200
2b
1-cysPrx_C-2v41H10
H:162-200
2c
1-cysPrx_C-2v41H11
H:162-200
2d
1-cysPrx_C-2v41H12
H:162-200
2e
1-cysPrx_C-2v41H13
H:162-200
2f
1-cysPrx_C-2v41H14
H:162-200
2g
1-cysPrx_C-2v41H15
H:162-200
2h
1-cysPrx_C-2v41H16
H:162-200
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Asym.Unit (286 KB)
Header - Asym.Unit
Biol.Unit 1 (74 KB)
Header - Biol.Unit 1
Biol.Unit 2 (72 KB)
Header - Biol.Unit 2
Biol.Unit 3 (73 KB)
Header - Biol.Unit 3
Biol.Unit 4 (73 KB)
Header - Biol.Unit 4
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