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2V41
Asym. Unit
Info
Asym.Unit (286 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (72 KB)
Biol.Unit 3 (73 KB)
Biol.Unit 4 (73 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C45S MUTANT OF THE PEROXIREDOXIN 6 OF ARENICOLA MARINA. ORTHORHOMBIC FORM
Authors
:
A. Smeets, J. P. Declercq
Date
:
27 Jun 07 (Deposition) - 08 Apr 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Antioxidant Enzymes, Oxidoreductase, Peroxiredoxins, Arenicola Marina
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Smeets, E. Loumaye, A. Clippe, J. F. Rees, B. Knoops, J. P. Declercq
The Crystal Structure Of The C45S Mutant Of Annelid Arenicola Marina Peroxiredoxin 6 Supports Its Assignment To The Mechanistically Typical 2- Cys Subfamily Without Any Formation Of Toroid- Shaped Decamers.
Protein Sci. V. 17 700 2008
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: BENZOIC ACID (BEZa)
1b: BENZOIC ACID (BEZb)
1c: BENZOIC ACID (BEZc)
1d: BENZOIC ACID (BEZd)
1e: BENZOIC ACID (BEZe)
1f: BENZOIC ACID (BEZf)
1g: BENZOIC ACID (BEZg)
1h: BENZOIC ACID (BEZh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BEZ
8
Ligand/Ion
BENZOIC ACID
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:42 , PRO A:43 , VAL A:44 , SER A:45 , GLU A:117 , ARG A:128 , PRO B:187
BINDING SITE FOR RESIDUE BEZ A1222
2
AC2
SOFTWARE
PRO A:187 , THR B:42 , PRO B:43 , VAL B:44 , SER B:45 , GLU B:117 , ARG B:128
BINDING SITE FOR RESIDUE BEZ B1222
3
AC3
SOFTWARE
THR C:42 , PRO C:43 , VAL C:44 , SER C:45 , GLU C:117 , ARG C:128 , PRO D:187
BINDING SITE FOR RESIDUE BEZ C1218
4
AC4
SOFTWARE
PRO C:187 , THR D:42 , PRO D:43 , VAL D:44 , SER D:45 , GLU D:117 , ARG D:128
BINDING SITE FOR RESIDUE BEZ D1222
5
AC5
SOFTWARE
THR E:42 , PRO E:43 , VAL E:44 , SER E:45 , GLU E:117 , ARG E:128 , PRO F:187
BINDING SITE FOR RESIDUE BEZ E1222
6
AC6
SOFTWARE
THR F:42 , PRO F:43 , VAL F:44 , SER F:45 , GLU F:117 , ARG F:128
BINDING SITE FOR RESIDUE BEZ F1222
7
AC7
SOFTWARE
THR G:42 , PRO G:43 , VAL G:44 , SER G:45 , GLU G:117 , ARG G:128 , PRO H:187
BINDING SITE FOR RESIDUE BEZ G1222
8
AC8
SOFTWARE
PRO G:187 , THR H:42 , PRO H:43 , VAL H:44 , SER H:45 , GLU H:117 , ARG H:128
BINDING SITE FOR RESIDUE BEZ H1222
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2v41a_ (A:)
1b: SCOP_d2v41b_ (B:)
1c: SCOP_d2v41c_ (C:)
1d: SCOP_d2v41d_ (D:)
1e: SCOP_d2v41e_ (E:)
1f: SCOP_d2v41f_ (F:)
1g: SCOP_d2v41g_ (G:)
1h: SCOP_d2v41h_ (H:)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
automated matches
(46)
Arenicola marina [TaxId: 6344]
(4)
1a
d2v41a_
A:
1b
d2v41b_
B:
1c
d2v41c_
C:
1d
d2v41d_
D:
1e
d2v41e_
E:
1f
d2v41f_
F:
1g
d2v41g_
G:
1h
d2v41h_
H:
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2v41A02 (A:152-221)
1b: CATH_2v41B02 (B:152-221)
1c: CATH_2v41D02 (D:152-221)
1d: CATH_2v41E02 (E:152-221)
1e: CATH_2v41F02 (F:152-221)
1f: CATH_2v41G02 (G:152-221)
1g: CATH_2v41H02 (H:152-221)
1h: CATH_2v41C02 (C:152-217)
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)
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)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Antioxidant, Horf6; Chain A, domain 2
(5)
Homologous Superfamily
:
Antioxidant, Horf6; Chain A, domain2
(5)
Arenicola marina. Organism_taxid: 6344.
(1)
1a
2v41A02
A:152-221
1b
2v41B02
B:152-221
1c
2v41D02
D:152-221
1d
2v41E02
E:152-221
1e
2v41F02
F:152-221
1f
2v41G02
G:152-221
1g
2v41H02
H:152-221
1h
2v41C02
C:152-217
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Pfam Domains
(2, 16)
Info
all PFAM domains
1a: PFAM_AhpC_TSA_2v41H01 (H:5-142)
1b: PFAM_AhpC_TSA_2v41H02 (H:5-142)
1c: PFAM_AhpC_TSA_2v41H03 (H:5-142)
1d: PFAM_AhpC_TSA_2v41H04 (H:5-142)
1e: PFAM_AhpC_TSA_2v41H05 (H:5-142)
1f: PFAM_AhpC_TSA_2v41H06 (H:5-142)
1g: PFAM_AhpC_TSA_2v41H07 (H:5-142)
1h: PFAM_AhpC_TSA_2v41H08 (H:5-142)
2a: PFAM_1_cysPrx_C_2v41H09 (H:162-200)
2b: PFAM_1_cysPrx_C_2v41H10 (H:162-200)
2c: PFAM_1_cysPrx_C_2v41H11 (H:162-200)
2d: PFAM_1_cysPrx_C_2v41H12 (H:162-200)
2e: PFAM_1_cysPrx_C_2v41H13 (H:162-200)
2f: PFAM_1_cysPrx_C_2v41H14 (H:162-200)
2g: PFAM_1_cysPrx_C_2v41H15 (H:162-200)
2h: PFAM_1_cysPrx_C_2v41H16 (H:162-200)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Thioredoxin
(367)
Family
:
AhpC-TSA
(28)
Arenicola marina (Lugworm) (Lumbricus marinus)
(3)
1a
AhpC-TSA-2v41H01
H:5-142
1b
AhpC-TSA-2v41H02
H:5-142
1c
AhpC-TSA-2v41H03
H:5-142
1d
AhpC-TSA-2v41H04
H:5-142
1e
AhpC-TSA-2v41H05
H:5-142
1f
AhpC-TSA-2v41H06
H:5-142
1g
AhpC-TSA-2v41H07
H:5-142
1h
AhpC-TSA-2v41H08
H:5-142
Clan
:
no clan defined [family: 1-cysPrx_C]
(19)
Family
:
1-cysPrx_C
(19)
Arenicola marina (Lugworm) (Lumbricus marinus)
(3)
2a
1-cysPrx_C-2v41H09
H:162-200
2b
1-cysPrx_C-2v41H10
H:162-200
2c
1-cysPrx_C-2v41H11
H:162-200
2d
1-cysPrx_C-2v41H12
H:162-200
2e
1-cysPrx_C-2v41H13
H:162-200
2f
1-cysPrx_C-2v41H14
H:162-200
2g
1-cysPrx_C-2v41H15
H:162-200
2h
1-cysPrx_C-2v41H16
H:162-200
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Asym.Unit (286 KB)
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