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2V3P
Asym. Unit
Info
Asym.Unit (76 KB)
Biol.Unit 1 (69 KB)
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(1)
Title
:
CRYSTALLOGRAPHIC ANALYSIS OF BETA-AXIAL LIGAND SUBSTITUTIONS IN COBALAMIN BOUND TO TRANSCOBALAMIN
Authors
:
J. Wuerges, S. Geremia, L. Randaccio
Date
:
19 Jun 07 (Deposition) - 30 Oct 07 (Release) - 31 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Ion Transport, Vitamin B12 Transport Protein, Transport Protein, Beta Ligand Substitution
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. Wuerges, S. Geremia, S. N. Fedosov, L. Randaccio
Vitamin B12 Transport Proteins: Crystallographic Analysis Of Beta-Axial Ligand Substitutions In Cobalamin Bound To Transcobalamin.
Iubmb Life V. 59 722 2007
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: COBALAMIN (B12a)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: SULFITE ION (SO3a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
B12
1
Ligand/Ion
COBALAMIN
2
CL
3
Ligand/Ion
CHLORIDE ION
3
SO3
1
Ligand/Ion
SULFITE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:85 , GLN A:86 , THR A:134 , TYR A:137 , GLN A:138 , ASP A:179 , ASN A:227 , TYR A:229 , SER A:230 , MET A:273 , GLN A:276 , SER A:362 , LEU A:363 , SER A:364 , GLY A:365 , PRO A:366 , PHE A:367 , LEU A:368 , PHE A:381 , TRP A:382 , GLN A:383 , VAL A:384 , LEU A:392 , GLN A:393 , GLY A:395 , TRP A:414 , CL A:1416 , SO3 A:1419 , HOH A:2056 , HOH A:2090 , HOH A:2116 , HOH A:2117 , HOH A:2118 , HOH A:2119 , HOH A:2120
BINDING SITE FOR RESIDUE B12 A1415
2
AC2
SOFTWARE
TYR A:229 , THR A:267 , GLN A:269 , ASN A:270 , GLN A:394 , B12 A:1415
BINDING SITE FOR RESIDUE CL A1416
3
AC3
SOFTWARE
ARG A:356 , PHE A:357 , ARG A:358 , SER A:370 , GLY A:373
BINDING SITE FOR RESIDUE CL A1417
4
AC4
SOFTWARE
ARG A:108 , GLN A:112
BINDING SITE FOR RESIDUE CL A1418
5
AC5
SOFTWARE
B12 A:1415
BINDING SITE FOR RESIDUE SO3 A1419
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_TCO2_BOVIN_001 (Q29P, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_TCO2_BOVIN_001
*
Q
47
P
TCO2_BOVIN
---
---
A
Q
29
P
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: COBALAMIN_BINDING (A:177-190)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COBALAMIN_BINDING
PS00468
Eukaryotic cobalamin-binding proteins signature.
TCO2_BOVIN
195-208
1
A:177-190
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Exons
(9, 9)
Info
All Exons
Exon 1.1a (A:1-4)
Exon 1.2 (A:4-68)
Exon 1.3 (A:68-125)
Exon 1.4 (A:125-179 (gaps))
Exon 1.5a (A:179-237)
Exon 1.6b (A:238-300)
Exon 1.7 (A:300-357)
Exon 1.8 (A:357-396)
Exon 1.9 (A:396-414)
View:
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5a
06: Boundary 1.5a/1.6b
07: Boundary 1.6b/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSBTAT00000029446
1a
ENSBTAE00000240311
chr17:
73063952-73064468
517
TCO2_BOVIN
1-22
22
1
A:1-4
4
1.2
ENSBTAT00000029446
2
ENSBTAE00000240310
chr17:
73067760-73067952
193
TCO2_BOVIN
22-86
65
1
A:4-68
65
1.3
ENSBTAT00000029446
3
ENSBTAE00000029032
chr17:
73068679-73068848
170
TCO2_BOVIN
86-143
58
1
A:68-125
58
1.4
ENSBTAT00000029446
4
ENSBTAE00000029042
chr17:
73071499-73071660
162
TCO2_BOVIN
143-197
55
1
A:125-179 (gaps)
55
1.5a
ENSBTAT00000029446
5a
ENSBTAE00000408560
chr17:
73072795-73072970
176
TCO2_BOVIN
197-255
59
1
A:179-237
59
1.6b
ENSBTAT00000029446
6b
ENSBTAE00000240308
chr17:
73073094-73073280
187
TCO2_BOVIN
256-318
63
1
A:238-300
63
1.7
ENSBTAT00000029446
7
ENSBTAE00000398838
chr17:
73074713-73074884
172
TCO2_BOVIN
318-375
58
1
A:300-357
58
1.8
ENSBTAT00000029446
8
ENSBTAE00000408006
chr17:
73077140-73077255
116
TCO2_BOVIN
375-414
40
1
A:357-396
40
1.9
ENSBTAT00000029446
9
ENSBTAE00000385103
chr17:
73079390-73079935
546
TCO2_BOVIN
414-433
20
1
A:396-414
19
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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