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2V2M
Biol. Unit 1
Info
Asym.Unit (41 KB)
Biol.Unit 1 (748 KB)
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(1)
Title
:
MUTANT (E53,56,57,60Q) RECOMBINANT HORSE SPLEEN APOFERRITIN COCRYSTALLIZED WITH HAEMIN IN BASIC CONDITIONS
Authors
:
N. De Val, J. P. Declercq
Date
:
06 Jun 07 (Deposition) - 24 Jun 08 (Release) - 30 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A
Biol. Unit 1: A (24x)
Keywords
:
Metal Transport, Iron, Haemin, Apoferritin, Iron Storage, Metal-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. De Val, J. P. Declercq, C. K. Lim, R. R. Crichton
Structural Analysis Of Haemin Demetallation By L-Chain Apoferritins
J. Inorg. Biochem. V. 112 77 2012
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Hetero Components
(2, 48)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
2a: GLYCEROL (GOLa)
3a: SULFATE ION (SO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CD
-1
Ligand/Ion
CADMIUM ION
2
GOL
24
Ligand/Ion
GLYCEROL
3
SO4
24
Ligand/Ion
SULFATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:80 , GLN A:82
BINDING SITE FOR RESIDUE CD A1172
2
AC2
SOFTWARE
ASP A:127
BINDING SITE FOR RESIDUE CD A1178
3
AC3
SOFTWARE
GLU A:130
BINDING SITE FOR RESIDUE CD A1173
4
AC4
SOFTWARE
HIS A:114 , CYS A:126 , GLU A:130
BINDING SITE FOR RESIDUE CD A1174
5
AC5
SOFTWARE
ASP A:38 , CYS A:48
BINDING SITE FOR RESIDUE CD A1175
6
AC6
SOFTWARE
GLU A:11 , HOH A:2012
BINDING SITE FOR RESIDUE CD A1176
7
AC7
SOFTWARE
GLU A:45
BINDING SITE FOR RESIDUE CD A1177
8
AC8
SOFTWARE
ASP A:127 , HIS A:132 , ASP A:135
BINDING SITE FOR RESIDUE GOL A1180
9
AC9
SOFTWARE
GLN A:6 , ASN A:7 , HOH A:2140 , HOH A:2190 , HOH A:2191 , HOH A:2192
BINDING SITE FOR RESIDUE SO4 A1179
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 72)
Info
All PROSITE Patterns/Profiles
1: FERRITIN_LIKE (A:6-155)
2: FERRITIN_1 (A:58-75)
3: FERRITIN_2 (A:122-142)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FERRITIN_LIKE
PS50905
Ferritin-like diiron domain profile.
FRIL_HORSE
7-156
24
A:6-155
2
FERRITIN_1
PS00540
Ferritin iron-binding regions signature 1.
FRIL_HORSE
58-76
24
A:58-75
3
FERRITIN_2
PS00204
Ferritin iron-binding regions signature 2.
FRIL_HORSE
123-143
24
A:122-142
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2v2ma_ (A:)
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Protein Domains
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)
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)
Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
automated matches
(70)
Horse (Equus caballus) [TaxId: 9796]
(6)
1a
d2v2ma_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2v2mA00 (A:2-171)
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)
Organisms
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)
(
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Horse (Equus caballus)
(31)
1a
2v2mA00
A:2-171
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Ferritin_2v2mA01 (A:13-154)
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Clans
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)
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Families
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(
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Organisms
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)
(
)
Clan
:
Ferritin
(185)
Family
:
Ferritin
(83)
Equus caballus (Horse)
(23)
1a
Ferritin-2v2mA01
A:13-154
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Protein & NOT Variant
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Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
Asymmetric Unit 5
Asymmetric Unit 6
Asymmetric Unit 7
Asymmetric Unit 8
Asymmetric Unit 9
Asymmetric Unit 10
Asymmetric Unit 11
Asymmetric Unit 12
Asymmetric Unit 13
Asymmetric Unit 14
Asymmetric Unit 15
Asymmetric Unit 16
Asymmetric Unit 17
Asymmetric Unit 18
Asymmetric Unit 19
Asymmetric Unit 20
Asymmetric Unit 21
Asymmetric Unit 22
Asymmetric Unit 23
Asymmetric Unit 24
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Asym.Unit (41 KB)
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