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2V29
Asym. Unit
Info
Asym.Unit (102 KB)
Biol.Unit 1 (188 KB)
Biol.Unit 2 (188 KB)
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(1)
Title
:
L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT K15W)
Authors
:
D. Grueninger, G. E. Schulz
Date
:
04 Jun 07 (Deposition) - 08 Jan 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.03
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (4x)
Biol. Unit 2: B (4x)
Keywords
:
Zinc Enzyme, Metal-Binding, Surface Mutation, 2-Ketose Degradation, Protein-Protein Interface, Lyase, Aldolase, Class Ii, Rare Sugar, Cleavage Of L-Rhamnulose-1-Phosphate To Dihydroxyacetone Phosphate, Bacterial L-Rhamnose Metabolism, Rhamnose Metabolism, Protein Engineering, Domain Motion For Mechanical Support Of Catalysis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Grueninger, G. E. Schulz
Antenna Domain Mobility And Enzymatic Reaction Of L-Rhamnulose-1-Phosphate Aldolase.
Biochemistry V. 47 607 2008
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 15)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
3
ZN
5
Ligand/Ion
ZINC ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:157 , HOH A:2170 , HOH A:2171 , ASP B:47 , HIS B:50
BINDING SITE FOR RESIDUE ZN A1273
02
AC2
SOFTWARE
HOH A:2172 , HIS B:141 , HIS B:143 , HIS B:212 , EDO B:1276 , HOH B:2184
BINDING SITE FOR RESIDUE ZN A1274
03
AC3
SOFTWARE
HIS A:141 , HIS A:143 , HIS A:212 , ACT A:1282 , HOH A:2179
BINDING SITE FOR RESIDUE ZN A1275
04
AC4
SOFTWARE
HIS A:46 , ASP A:47 , GLU B:200 , HIS B:204
BINDING SITE FOR RESIDUE ZN A1276
05
AC5
SOFTWARE
GLU A:200 , HIS A:204 , HOH A:2173 , HOH A:2174
BINDING SITE FOR RESIDUE ZN A1277
06
AC6
SOFTWARE
LEU B:150 , THR B:151 , LEU B:154 , GLU B:155 , PHE B:161 , PRO B:210 , GLN B:249 , HOH B:2183
BINDING SITE FOR RESIDUE EDO B1275
07
AC7
SOFTWARE
ZN A:1274 , HOH A:2172 , HIS B:143 , GLU B:171 , HIS B:212 , HOH B:2131 , HOH B:2184
BINDING SITE FOR RESIDUE EDO B1276
08
AC8
SOFTWARE
TRP A:8 , ASP A:38 , ASP A:41 , ARG A:137 , HOH A:2175
BINDING SITE FOR RESIDUE EDO A1278
09
AC9
SOFTWARE
ARG B:128 , ASP B:178 , GLN B:202 , LYS B:203 , HIS B:204 , SER B:205 , HOH B:2185
BINDING SITE FOR RESIDUE EDO B1277
10
BC1
SOFTWARE
GLY A:76 , ASN A:81 , ASP A:222 , HOH A:2130 , HOH A:2176
BINDING SITE FOR RESIDUE EDO A1279
11
BC2
SOFTWARE
ARG A:28 , ASN A:29 , VAL A:174 , HOH A:2107
BINDING SITE FOR RESIDUE EDO A1280
12
BC3
SOFTWARE
LYS A:23 , TRP A:25 , ASN A:146 , GLU A:232 , GLN A:236 , HOH A:2013 , HOH A:2137 , HOH A:2178
BINDING SITE FOR RESIDUE ACT A1281
13
BC4
SOFTWARE
TRP B:15 , ALA B:16 , ASP B:19 , ASP B:222 , HOH B:2186
BINDING SITE FOR RESIDUE ACT B1278
14
BC5
SOFTWARE
ASN B:29 , GLY B:31 , GLY B:76 , THR B:115 , HOH B:2044
BINDING SITE FOR RESIDUE ACT B1279
15
BC6
SOFTWARE
GLY A:30 , GLY A:31 , ASN A:32 , HIS A:141 , HIS A:143 , HIS A:212 , ZN A:1275 , HOH A:2179
BINDING SITE FOR RESIDUE ACT A1282
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2v29a_ (A:)
1b: SCOP_d2v29b_ (B:)
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
AraD/HMP-PK domain-like
(40)
Superfamily
:
AraD/HMP-PK domain-like
(40)
Family
:
AraD-like aldolase/epimerase
(35)
Protein domain
:
L-rhamnulose-1-phosphate aldolase
(8)
Escherichia coli [TaxId: 562]
(8)
1a
d2v29a_
A:
1b
d2v29b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2v29A00 (A:1-274)
1b: CATH_2v29B00 (B:1-274)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
L-fuculose-1-phosphate Aldolase
(38)
Homologous Superfamily
:
L-fuculose-1-phosphate Aldolase
(38)
Escherichia coli. Organism_taxid: 562.
(28)
1a
2v29A00
A:1-274
1b
2v29B00
B:1-274
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Aldolase_II_2v29B01 (B:11-239)
1b: PFAM_Aldolase_II_2v29B02 (B:11-239)
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Clans
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(
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(
)
Clan
:
no clan defined [family: Aldolase_II]
(19)
Family
:
Aldolase_II
(19)
Escherichia coli (strain K12)
(15)
1a
Aldolase_II-2v29B01
B:11-239
1b
Aldolase_II-2v29B02
B:11-239
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (102 KB)
Header - Asym.Unit
Biol.Unit 1 (188 KB)
Header - Biol.Unit 1
Biol.Unit 2 (188 KB)
Header - Biol.Unit 2
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