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2V1M
Asym. Unit
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Asym.Unit (68 KB)
Biol.Unit 1 (63 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SCHISTOSOMA MANSONI GLUTATHIONE PEROXIDASE
Authors
:
D. Dimastrogiovanni, A. E. Miele, F. Angelucci, G. Boumis, A. Bellelli, M. Brunori
Date
:
16 Sep 08 (Deposition) - 08 Sep 09 (Release) - 29 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Selenium, Selenocysteine, Oxidoreductase, Lipid Peroxidase, Schistosoma Detoxification Pathway
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Dimastrogiovanni, M. Anselmi, A. E. Miele, G. Boumis, L. Petersson, F. Angelucci, A. D. Nola, M. Brunori, A. Bellelli
Combining Crystallography And Molecular Dynamics: The Case Of Schistosoma Mansoni Phospholipid Glutathione Peroxidase.
Proteins V. 78 259 2010
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: LITHIUM ION (LIa)
3a: CYSTEINESULFONIC ACID (OCSa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
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No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
LI
1
Ligand/Ion
LITHIUM ION
3
OCS
1
Mod. Amino Acid
CYSTEINESULFONIC ACID
4
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:124 , THR A:125 , LYS A:131 , ARG A:148 , SER A:150 , PRO A:151 , HOH A:2209 , HOH A:2210 , HOH A:2211
BINDING SITE FOR RESIDUE SO4 A1171
2
AC2
SOFTWARE
GLY A:62 , HIS A:123 , LEU A:126 , THR A:127 , ASN A:128 , LI A:1174 , HOH A:2081 , HOH A:2083 , HOH A:2212 , HOH A:2213 , HOH A:2214
BINDING SITE FOR RESIDUE SO4 A1172
3
AC3
SOFTWARE
ASP A:161 , GLU A:164 , HOH A:2215
BINDING SITE FOR RESIDUE ACT A1173
4
AC4
SOFTWARE
SO4 A:1172 , HOH A:2214
BINDING SITE FOR RESIDUE LI A1174
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: GLUTATHIONE_PEROXID_1 (A:31-46)
2: GLUTATHIONE_PEROXID_2 (A:68-75)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLUTATHIONE_PEROXID_1
PS00460
Glutathione peroxidases active site.
GPX1_SCHMA
31-46
1
A:31-46
2
GLUTATHIONE_PEROXID_2
PS00763
Glutathione peroxidases signature 2.
GPX1_SCHMA
68-75
1
A:68-75
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2v1ma_ (A:)
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Protein Domains
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Organisms
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)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Blood fluke (Schistosoma mansoni) [TaxId: 6183]
(9)
1a
d2v1ma_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_GSHPx_2v1mA01 (A:11-119)
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Clan
:
Thioredoxin
(367)
Family
:
GSHPx
(11)
Schistosoma mansoni (Blood fluke)
(2)
1a
GSHPx-2v1mA01
A:11-119
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Chain A
Asymmetric Unit 1
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