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Getting 'Hetero Component' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
2V15
Asym. Unit
Info
Asym.Unit (311 KB)
Biol.Unit 1 (304 KB)
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(1)
Title
:
TERBIUM BINDING IN STREPTOCOCCUS SUIS DPR PROTEIN
Authors
:
H. Havukainen, A. C. Papageorgiou, A. Kauko
Date
:
22 May 07 (Deposition) - 10 Jun 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Oxidoreductase, Iron, Dps-Family, Ferroxidase, Iron-Binding, Peroxide Resistance, Iron Storage, Metal-Binding, Ferritin-Like
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Havukainen, S. Haataja, A. Kauko, A. T. Pulliainen, A. Salminen, T. Haikarainen, J. Finne, A. C. Papageorgiou
Structural Basis Of The Zinc- And Terbium-Mediated Inhibition Of Ferroxidase Activity In Dps Ferritin- Like Proteins.
Protein Sci. V. 17 1513 2008
[
close entry info
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Hetero Components
(4, 30)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
3a: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEa)
3b: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEb)
3c: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEc)
3d: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEd)
4a: TERBIUM(III) ION (TBa)
4b: TERBIUM(III) ION (TBb)
4c: TERBIUM(III) ION (TBc)
4d: TERBIUM(III) ION (TBd)
4e: TERBIUM(III) ION (TBe)
4f: TERBIUM(III) ION (TBf)
4g: TERBIUM(III) ION (TBg)
4h: TERBIUM(III) ION (TBh)
4i: TERBIUM(III) ION (TBi)
4j: TERBIUM(III) ION (TBj)
4k: TERBIUM(III) ION (TBk)
4l: TERBIUM(III) ION (TBl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
CL
10
Ligand/Ion
CHLORIDE ION
3
EPE
4
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC ACID
4
TB
12
Ligand/Ion
TERBIUM(III) ION
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:47 , CL A:1173 , HOH A:2015 , HOH A:2016 , ASP C:73 , GLU C:77 , HOH C:2015
BINDING SITE FOR RESIDUE TB C1172
02
AC2
SOFTWARE
HIS A:59 , GLU C:77 , TB C:1172 , HOH C:2015
BINDING SITE FOR RESIDUE CL A1173
03
AC3
SOFTWARE
GLU B:113 , HOH K:2018 , HOH K:2045
BINDING SITE FOR RESIDUE CA B1173
04
AC4
SOFTWARE
HIS B:47 , HOH B:2016 , HOH B:2017 , ASP D:74 , GLU D:78 , CL D:1174 , HOH D:2025
BINDING SITE FOR RESIDUE TB D1173
05
AC5
SOFTWARE
HIS B:59 , HOH B:2016 , GLU D:78 , TB D:1173 , HOH D:2025
BINDING SITE FOR RESIDUE CL D1174
06
AC6
SOFTWARE
ASP A:74 , GLU A:78 , HOH A:2018 , HIS C:46 , CL C:1173 , HOH C:2013 , HOH C:2014
BINDING SITE FOR RESIDUE TB A1174
07
AC7
SOFTWARE
GLU A:78 , TB A:1174 , HOH A:2009 , HOH A:2018 , HIS C:58 , HOH C:2013
BINDING SITE FOR RESIDUE CL C1173
08
AC8
SOFTWARE
ASP B:74 , GLU B:78 , HOH B:2020 , HOH B:2021 , HIS D:47 , CL D:1175 , HOH D:2020
BINDING SITE FOR RESIDUE TB B1174
09
AC9
SOFTWARE
GLU B:78 , TB B:1174 , HOH B:2021 , HIS D:59 , HOH D:2020
BINDING SITE FOR RESIDUE CL D1175
10
BC1
SOFTWARE
HOH C:2042 , GLY E:54 , ASP E:137 , HOH E:2036 , HOH E:2037 , GLY L:54 , ILE L:57
BINDING SITE FOR RESIDUE EPE E1173
11
BC2
SOFTWARE
HIS E:47 , CL E:1174 , HOH E:2007 , HOH E:2013 , ASP G:74 , GLU G:78 , HOH G:2024
BINDING SITE FOR RESIDUE TB G1173
12
BC3
SOFTWARE
HIS E:47 , HIS E:59 , HOH E:2006 , HOH E:2013 , GLU G:78 , TB G:1173 , HOH G:2024
BINDING SITE FOR RESIDUE CL E1174
13
BC4
SOFTWARE
HIS F:47 , HOH F:2014 , HOH F:2015 , ASP H:74 , GLU H:78 , HOH H:2018 , HOH H:2019
BINDING SITE FOR RESIDUE TB H1173
14
BC5
SOFTWARE
ARG H:51 , CA H:1174 , CL H:1175
BINDING SITE FOR RESIDUE CA G 173
15
BC6
SOFTWARE
ASP E:74 , GLU E:78 , CL E:1176 , HIS G:47 , HOH G:2011 , HOH G:2019 , HOH G:2020
BINDING SITE FOR RESIDUE TB E1175
16
BC7
SOFTWARE
ASP E:74 , GLU E:78 , TB E:1175 , HOH G:2019 , HOH G:2020
BINDING SITE FOR RESIDUE CL E1176
17
BC8
SOFTWARE
ASN G:108 , CA G:173 , HOH G:2039 , ASN H:108
BINDING SITE FOR RESIDUE CA H1174
18
BC9
SOFTWARE
THR G:110 , CA G:173 , THR H:110 , ILE H:111 , HOH H:2011 , HOH H:2029
BINDING SITE FOR RESIDUE CL H1175
19
CC1
SOFTWARE
ASP F:74 , GLU F:78 , HOH F:2017 , HOH F:2018 , HIS H:47 , HOH H:2012 , HOH H:2013
BINDING SITE FOR RESIDUE TB F1173
20
CC2
SOFTWARE
GLY D:54 , HOH D:2016 , HOH D:2062 , GLY G:54 , HOH G:2018 , ARG I:53 , GLY I:54 , ILE I:57
BINDING SITE FOR RESIDUE EPE D1176
21
CC3
SOFTWARE
HIS I:47 , CL I:1173 , HOH I:2014 , ASP K:74 , GLU K:78 , HOH K:2019 , HOH K:2021
BINDING SITE FOR RESIDUE TB K1173
22
CC4
SOFTWARE
HIS I:47 , HIS I:59 , HOH I:2014 , GLU K:78 , TB K:1173 , HOH K:2021
BINDING SITE FOR RESIDUE CL I1173
23
CC5
SOFTWARE
ARG F:53 , HOH F:2059 , HOH F:2060 , HOH F:2061 , GLY J:54 , HOH J:2040 , ASP K:137
BINDING SITE FOR RESIDUE EPE F1174
24
CC6
SOFTWARE
HIS J:47 , CL J:1173 , HOH J:2011 , HOH J:2012 , ASP L:74 , GLU L:78 , HOH L:2015
BINDING SITE FOR RESIDUE TB L1173
25
CC7
SOFTWARE
MET B:161 , HIS J:47 , HIS J:59 , HOH J:2011 , GLU L:78 , TB L:1173 , HOH L:2015
BINDING SITE FOR RESIDUE CL J1173
26
CC8
SOFTWARE
GLY A:54 , HOH A:2049 , HOH H:2036 , GLY K:54 , GLU K:112 , HOH K:2055
BINDING SITE FOR RESIDUE EPE K1174
27
CC9
SOFTWARE
LEU F:166 , HOH F:2035 , HOH F:2052 , HOH F:2053 , ASP K:24 , GLU K:139
BINDING SITE FOR RESIDUE CA K1175
28
DC1
SOFTWARE
ASP I:74 , GLU I:78 , CL I:1175 , HOH I:2018 , HOH I:2019 , HIS K:47 , HOH K:2015
BINDING SITE FOR RESIDUE TB I1174
29
DC2
SOFTWARE
MET A:161 , GLU I:78 , TB I:1174 , HOH I:2019 , HIS K:47 , HIS K:59 , HOH K:2015
BINDING SITE FOR RESIDUE CL I1175
30
DC3
SOFTWARE
ASP J:74 , GLU J:78 , HOH J:2018 , HIS L:47 , HOH L:2006 , HOH L:2011 , HOH L:2012
BINDING SITE FOR RESIDUE TB J1174
[
close Site info
]
SAPs(SNPs)/Variants
(9, 108)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_DPS_STRSU_001 (A27S, chain C/A/B/D/E/F/G/H/I/J/K/L, )
2: VAR_DPS_STRSU_002 (I42L, chain C/A/B/D/E/F/G/H/I/J/K/L, )
3: VAR_DPS_STRSU_003 (L91F, chain C/A/B/D/E/F/G/H/I/J/K/L, )
4: VAR_DPS_STRSU_004 (V103A, chain C/A/B/D/E/F/G/H/I/J/K/L, )
5: VAR_DPS_STRSU_005 (L104P, chain C/A/B/D/E/F/G/H/I/J/K/L, )
6: VAR_DPS_STRSU_006 (T110M, chain C/A/B/D/E/F/G/H/I/J/K/L, )
7: VAR_DPS_STRSU_007 (A116V, chain C/A/B/D/E/F/G/H/I/J/K/L, )
8: VAR_DPS_STRSU_008 (S154N, chain C/A/B/D/E/F/G/H/I/J/K/L, )
9: VAR_DPS_STRSU_009 (K171G, chain C/A/B/D/E/F/G/H/I/J/K/L, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_DPS_STRSU_001
*
A
27
S
DPS_STRSU
---
---
C
A/B/D/E/F/G/H/I/J/K/L
A
26
27
S
2
UniProt
VAR_DPS_STRSU_002
*
I
42
L
DPS_STRSU
---
---
C
A/B/D/E/F/G/H/I/J/K/L
I
41
42
L
3
UniProt
VAR_DPS_STRSU_003
*
L
91
F
DPS_STRSU
---
---
C
A/B/D/E/F/G/H/I/J/K/L
L
90
91
F
4
UniProt
VAR_DPS_STRSU_004
*
V
103
A
DPS_STRSU
---
---
C
A/B/D/E/F/G/H/I/J/K/L
V
102
103
A
5
UniProt
VAR_DPS_STRSU_005
*
L
104
P
DPS_STRSU
---
---
C
A/B/D/E/F/G/H/I/J/K/L
L
103
104
P
6
UniProt
VAR_DPS_STRSU_006
*
T
110
M
DPS_STRSU
---
---
C
A/B/D/E/F/G/H/I/J/K/L
T
109
110
M
7
UniProt
VAR_DPS_STRSU_007
*
A
116
V
DPS_STRSU
---
---
C
A/B/D/E/F/G/H/I/J/K/L
A
115
116
V
8
UniProt
VAR_DPS_STRSU_008
*
S
154
N
DPS_STRSU
---
---
C
A/B/D/E/F/G/H/I/J/K/L
S
153
154
N
9
UniProt
VAR_DPS_STRSU_009
*
K
171
G
DPS_STRSU
---
---
C
A/B/D/E/F/G/H/I/J/K/L
K
170
171
G
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2v15a_ (A:)
1b: SCOP_d2v15b_ (B:)
1c: SCOP_d2v15c_ (C:)
1d: SCOP_d2v15d_ (D:)
1e: SCOP_d2v15e_ (E:)
1f: SCOP_d2v15f_ (F:)
1g: SCOP_d2v15g_ (G:)
1h: SCOP_d2v15h_ (H:)
1i: SCOP_d2v15i_ (I:)
1j: SCOP_d2v15j_ (J:)
1k: SCOP_d2v15k_ (K:)
1l: SCOP_d2v15l_ (L:)
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)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
Dodecameric ferritin homolog
(44)
Streptococcus suis [TaxId: 1307]
(8)
1a
d2v15a_
A:
1b
d2v15b_
B:
1c
d2v15c_
C:
1d
d2v15d_
D:
1e
d2v15e_
E:
1f
d2v15f_
F:
1g
d2v15g_
G:
1h
d2v15h_
H:
1i
d2v15i_
I:
1j
d2v15j_
J:
1k
d2v15k_
K:
1l
d2v15l_
L:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2v15G00 (G:8-172)
1b: CATH_2v15I00 (I:20-172)
1c: CATH_2v15D00 (D:21-172)
1d: CATH_2v15F00 (F:21-172)
1e: CATH_2v15H00 (H:21-172)
1f: CATH_2v15J00 (J:21-172)
1g: CATH_2v15K00 (K:21-172)
1h: CATH_2v15L00 (L:21-172)
1i: CATH_2v15A00 (A:22-172)
1j: CATH_2v15B00 (B:22-172)
1k: CATH_2v15C00 (C:21-171)
1l: CATH_2v15E00 (E:22-172)
View:
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Streptococcus suis. Organism_taxid: 1307. Strain: d282.
(5)
1a
2v15G00
G:8-172
1b
2v15I00
I:20-172
1c
2v15D00
D:21-172
1d
2v15F00
F:21-172
1e
2v15H00
H:21-172
1f
2v15J00
J:21-172
1g
2v15K00
K:21-172
1h
2v15L00
L:21-172
1i
2v15A00
A:22-172
1j
2v15B00
B:22-172
1k
2v15C00
C:21-171
1l
2v15E00
E:22-172
[
close CATH info
]
Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_Ferritin_2v15L01 (L:26-172)
1b: PFAM_Ferritin_2v15L02 (L:26-172)
1c: PFAM_Ferritin_2v15L03 (L:26-172)
1d: PFAM_Ferritin_2v15L04 (L:26-172)
1e: PFAM_Ferritin_2v15L05 (L:26-172)
1f: PFAM_Ferritin_2v15L06 (L:26-172)
1g: PFAM_Ferritin_2v15L07 (L:26-172)
1h: PFAM_Ferritin_2v15L08 (L:26-172)
1i: PFAM_Ferritin_2v15L09 (L:26-172)
1j: PFAM_Ferritin_2v15L10 (L:26-172)
1k: PFAM_Ferritin_2v15L11 (L:26-172)
1l: PFAM_Ferritin_2v15L12 (L:26-172)
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Clans
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Families
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(
)
Organisms
(
)
(
)
Clan
:
Ferritin
(185)
Family
:
Ferritin
(83)
Streptococcus suis
(7)
1a
Ferritin-2v15L01
L:26-172
1b
Ferritin-2v15L02
L:26-172
1c
Ferritin-2v15L03
L:26-172
1d
Ferritin-2v15L04
L:26-172
1e
Ferritin-2v15L05
L:26-172
1f
Ferritin-2v15L06
L:26-172
1g
Ferritin-2v15L07
L:26-172
1h
Ferritin-2v15L08
L:26-172
1i
Ferritin-2v15L09
L:26-172
1j
Ferritin-2v15L10
L:26-172
1k
Ferritin-2v15L11
L:26-172
1l
Ferritin-2v15L12
L:26-172
[
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