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2V0Y
Biol. Unit 1
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Asym.Unit (91 KB)
Biol.Unit 1 (337 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF APO C298S TRYPTOPHANASE FROM E.COLI
Authors
:
A. Kogan, G. Y. Gdalevsky, R. Cohen-Luria, Y. Goldgur, A. H. Parola, O. A
Date
:
21 May 07 (Deposition) - 10 Jun 08 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Lyase, Pyridoxal Phosphate, Tryptophan Catabolism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Kogan, G. Y. Gdalevsky, R. Cohen-Luria, Y. Goldgur, R. S. Phillips, A. H. Parola, O. Almog
Conformational Changes And Loose Packing Promote E. Coli Tryptophanase Cold Lability.
Bmc Struct. Biol. V. 9 65 2009
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEa)
3a: MAGNESIUM ION (MGa)
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No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
CME
4
Mod. Amino Acid
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:65 , ARG A:69 , HOH A:2116
BINDING SITE FOR RESIDUE CL A 1472
2
AC2
SOFTWARE
HOH A:2105 , HOH A:2131 , HOH A:2132 , HOH A:2350 , HOH A:2376
BINDING SITE FOR RESIDUE MG A 1474
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: BETA_ELIM_LYASE (A:260-278)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BETA_ELIM_LYASE
PS00853
Beta-eliminating lyases pyridoxal-phosphate attachment site.
TNAA_ECOLI
260-278
4
A:260-278
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2v0ya1 (A:5-471)
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(
)
(
)
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)
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)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
Beta-eliminating lyases
(16)
Protein domain
:
Tryptophan indol-lyase (tryptophanase)
(5)
Escherichia coli [TaxId: 562]
(4)
1a
d2v0ya1
A:5-471
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2v0yA02 (A:61-326)
2a: CATH_2v0yA01 (A:5-60,A:327-471)
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)
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)
(
)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Escherichia coli. Organism_taxid: 562.
(56)
1a
2v0yA02
A:61-326
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Escherichia coli. Organism_taxid: 562.
(56)
2a
2v0yA01
A:5-60,A:327-471
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Beta_elim_lyase_2v0yA01 (A:49-438)
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Clans
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)
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)
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)
(
)
Clan
:
PLP_aminotran
(240)
Family
:
Beta_elim_lyase
(13)
Escherichia coli (strain K12)
(3)
1a
Beta_elim_lyase-2v0yA01
A:49-438
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Asym.Unit (91 KB)
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