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Asym. Unit
Info
Asym.Unit (84 KB)
Biol.Unit 1 (228 KB)
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(1)
Title
:
CHARACTERIZATION OF SUBSTRATE BINDING AND CATALYSIS OF THE POTENTIAL ANTIBACTERIAL TARGET N-ACETYLGLUCOSAMINE-1-PHOSPHATE URIDYLTRANSFERASE (GLMU)
Authors
:
I. Mochalkin, S. Lightle, J. F. Ohren, N. Y. Chirgadze
Date
:
14 May 07 (Deposition) - 15 Jan 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Glmu, Cell Wall, Magnesium, Cell Shape, Transferase, Peptidoglycan Synthesis, Associative Mechanism, Multifunctional Enzyme, Nucleotidyltransferase, Uridylation, Metal-Binding, Acyltransferase, Catalytic Mechanism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Mochalkin, S. Lightle, Y. Zhu, J. F. Ohren, C. Spessard, N. Y. Chirgadze, C. Banotai, M. Melnick, L. Mcdowell
Characterization Of Substrate Binding And Catalysis In The Potential Antibacterial Target N- Acetylglucosamine-1-Phosphate Uridyltransferase (Glmu).
Protein Sci. V. 16 2657 2007
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: TETRAETHYLENE GLYCOL (PG4a)
2a: TRIETHYLENE GLYCOL (PGEa)
2b: TRIETHYLENE GLYCOL (PGEb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
4a: URIDINE-5'-DIPHOSPHATE (UDPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
2
PGE
2
Ligand/Ion
TRIETHYLENE GLYCOL
3
SO4
7
Ligand/Ion
SULFATE ION
4
UDP
1
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:11 , ALA A:13 , GLY A:14 , GLN A:76 , GLN A:79 , LEU A:80 , GLY A:81 , THR A:82 , ASP A:105 , ASN A:227 , HOH A:2294 , HOH A:2295 , HOH A:2303
BINDING SITE FOR RESIDUE UDP A1454
02
AC2
SOFTWARE
ASN A:72 , ASP A:388 , PHE A:402 , THR A:420 , GLY A:422 , ALA A:423 , HOH A:2268 , HOH A:2296
BINDING SITE FOR RESIDUE PG4 A1455
03
AC3
SOFTWARE
VAL A:153 , ASP A:157 , ASN A:159 , GLN A:162 , ASN A:189 , ASN A:191 , ALA A:192 , GLY A:194
BINDING SITE FOR RESIDUE PGE A1456
04
AC4
SOFTWARE
GLU A:49 , ASN A:50 , GLN A:70 , VAL A:71 , ASN A:72 , TYR A:387 , PRO A:412 , HOH A:2297
BINDING SITE FOR RESIDUE PGE A1457
05
AC5
SOFTWARE
LYS A:360 , ASN A:362 , HIS A:363 , HOH A:2224 , HOH A:2245 , HOH A:2298
BINDING SITE FOR RESIDUE SO4 A1458
06
AC6
SOFTWARE
ASN A:377 , ARG A:451 , HOH A:2299 , HOH A:2300
BINDING SITE FOR RESIDUE SO4 A1459
07
AC7
SOFTWARE
ARG A:333 , PRO A:334 , HOH A:2301
BINDING SITE FOR RESIDUE SO4 A1460
08
AC8
SOFTWARE
LYS A:15 , HIS A:57 , GLY A:58
BINDING SITE FOR RESIDUE SO4 A1461
09
AC9
SOFTWARE
HIS A:57 , GLN A:79
BINDING SITE FOR RESIDUE SO4 A1462
10
BC1
SOFTWARE
GLY A:14 , LYS A:15 , GLY A:16 , THR A:17 , HOH A:2058 , HOH A:2303
BINDING SITE FOR RESIDUE SO4 A1463
11
BC2
SOFTWARE
ARG A:18 , ASN A:227 , GLN A:231 , HOH A:2304
BINDING SITE FOR RESIDUE SO4 A1464
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: HEXAPEP_TRANSFERASES (A:403-431)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEXAPEP_TRANSFERASES
PS00101
Hexapeptide-repeat containing-transferases signature.
GLMU_HAEIN
403-431
1
A:403-431
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2v0ka2 (A:252-453)
2a: SCOP_d2v0ka1 (A:4-251)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Single-stranded left-handed beta-helix
(154)
Superfamily
:
Trimeric LpxA-like enzymes
(147)
Family
:
automated matches
(55)
Protein domain
:
automated matches
(55)
Haemophilus influenzae [TaxId: 727]
(9)
1a
d2v0ka2
A:252-453
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
automated matches
(48)
Protein domain
:
automated matches
(48)
Haemophilus influenzae [TaxId: 727]
(9)
2a
d2v0ka1
A:4-251
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2v0kA01 (A:4-227)
2a: CATH_2v0kA02 (A:228-453)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Haemophilus influenzae. Organism_taxid: 727
(5)
1a
2v0kA01
A:4-227
Class
:
Mainly Beta
(13760)
Architecture
:
3 Solenoid
(196)
Topology
:
UDP N-Acetylglucosamine Acyltransferase; domain 1
(90)
Homologous Superfamily
:
Hexapeptide repeat proteins
(85)
Haemophilus influenzae. Organism_taxid: 727
(5)
2a
2v0kA02
A:228-453
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Pfam Domains
(2, 5)
Info
all PFAM domains
1a: PFAM_NTP_transf_3_2v0kA01 (A:8-258)
2a: PFAM_Hexapep_2v0kA02 (A:394-429)
2b: PFAM_Hexapep_2v0kA03 (A:394-429)
2c: PFAM_Hexapep_2v0kA04 (A:394-429)
2d: PFAM_Hexapep_2v0kA05 (A:394-429)
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)
Organisms
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)
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)
Clan
:
GT-A
(172)
Family
:
NTP_transf_3
(13)
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
(7)
1a
NTP_transf_3-2v0kA01
A:8-258
Clan
:
no clan defined [family: Hexapep]
(52)
Family
:
Hexapep
(52)
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
(10)
2a
Hexapep-2v0kA02
A:394-429
2b
Hexapep-2v0kA03
A:394-429
2c
Hexapep-2v0kA04
A:394-429
2d
Hexapep-2v0kA05
A:394-429
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Chain A
Asymmetric Unit 1
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Asym.Unit (84 KB)
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