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2V0I
Biol. Unit 1
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Asym.Unit (85 KB)
Biol.Unit 1 (230 KB)
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(1)
Title
:
CHARACTERIZATION OF SUBSTRATE BINDING AND CATALYSIS OF THE POTENTIAL ANTIBACTERIAL TARGET N-ACETYLGLUCOSAMINE-1-PHOSPHATE URIDYLTRANSFERASE (GLMU)
Authors
:
I. Mochalkin, S. Lightle, J. F. Ohren, N. Y. Chirgadze
Date
:
14 May 07 (Deposition) - 15 Jan 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.89
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Cell Wall, Cell Shape, Transferase, Peptidoglycan Associative Mechanism, Multifunctional Enzyme, Nucleotidyltransferase, Uridylation, Metal-Binding, Acyltransferase,
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Mochalkin, S. Lightle, Y. Zhu, J. F. Ohren, C. Spessard, N. Y. Chirgadze, C. Banotai, M. Melnick, L. Mcdowell
Characterization Of Substrate Binding And Catalysis In The Potential Antibacterial Target N- Acetylglucosamine-1-Phosphate Uridyltransferase (Glmu).
Protein Sci. V. 16 2657 2007
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Hetero Components
(4, 30)
Info
All Hetero Components
1a: DI(HYDROXYETHYL)ETHER (PEGa)
2a: TETRAETHYLENE GLYCOL (PG4a)
2b: TETRAETHYLENE GLYCOL (PG4b)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
4a: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PEG
3
Ligand/Ion
DI(HYDROXYETHYL)ETHER
2
PG4
6
Ligand/Ion
TETRAETHYLENE GLYCOL
3
SO4
18
Ligand/Ion
SULFATE ION
4
UD1
3
Ligand/Ion
URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:11 , ALA A:12 , ALA A:13 , GLY A:14 , GLN A:76 , GLN A:79 , LEU A:80 , GLY A:81 , THR A:82 , TYR A:103 , ASP A:105 , TYR A:139 , GLY A:140 , GLU A:154 , ASN A:169 , THR A:170 , TYR A:197 , THR A:199 , HOH A:2065 , HOH A:2089 , HOH A:2282 , HOH A:2283 , HOH A:2284 , HOH A:2285 , HOH A:2300
BINDING SITE FOR RESIDUE UD1 A1455
02
AC2
SOFTWARE
GLU A:49 , ASN A:50 , ILE A:51 , GLN A:70 , ASN A:72 , TYR A:387 , HOH A:2027 , HOH A:2031 , HOH A:2287 , HOH A:2288
BINDING SITE FOR RESIDUE PG4 A1456
03
AC3
SOFTWARE
ASN A:72 , ASN A:386 , ASP A:388 , PHE A:402 , THR A:420 , GLY A:422 , ALA A:423 , ILE A:438 , HOH A:2254 , HOH A:2290 , HOH A:2291
BINDING SITE FOR RESIDUE PG4 A1457
04
AC4
SOFTWARE
HIS A:57 , GLY A:58 , GLY A:59 , ASP A:60 , HOH A:2292
BINDING SITE FOR RESIDUE PEG A1458
05
AC5
SOFTWARE
LYS A:360 , ASN A:362 , HIS A:363 , HOH A:2222 , HOH A:2294 , HOH A:2295 , HOH A:2296
BINDING SITE FOR RESIDUE SO4 A1459
06
AC6
SOFTWARE
ASN A:377 , ARG A:451 , HOH A:2297 , HOH A:2298
BINDING SITE FOR RESIDUE SO4 A1460
07
AC7
SOFTWARE
LYS A:15 , GLY A:16 , THR A:17 , HOH A:2299 , HOH A:2300 , HOH A:2301
BINDING SITE FOR RESIDUE SO4 A1461
08
AC8
SOFTWARE
LYS A:4 , LYS A:121 , GLU A:123 , HOH A:2302 , HOH A:2303
BINDING SITE FOR RESIDUE SO4 A1462
09
AC9
SOFTWARE
LYS A:310 , ARG A:331 , ARG A:333 , PRO A:334 , HOH A:2184 , HOH A:2304
BINDING SITE FOR RESIDUE SO4 A1463
10
BC1
SOFTWARE
ARG A:429 , ASP A:430 , HOH A:2248
BINDING SITE FOR RESIDUE SO4 A1464
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: HEXAPEP_TRANSFERASES (A:403-431)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEXAPEP_TRANSFERASES
PS00101
Hexapeptide-repeat containing-transferases signature.
GLMU_HAEIN
403-431
3
A:403-431
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2v0ia2 (A:252-454)
2a: SCOP_d2v0ia1 (A:4-251)
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Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Single-stranded left-handed beta-helix
(154)
Superfamily
:
Trimeric LpxA-like enzymes
(147)
Family
:
automated matches
(55)
Protein domain
:
automated matches
(55)
Haemophilus influenzae [TaxId: 727]
(9)
1a
d2v0ia2
A:252-454
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
automated matches
(48)
Protein domain
:
automated matches
(48)
Haemophilus influenzae [TaxId: 727]
(9)
2a
d2v0ia1
A:4-251
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2v0iA01 (A:4-227)
2a: CATH_2v0iA02 (A:228-454)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Haemophilus influenzae. Organism_taxid: 727
(5)
1a
2v0iA01
A:4-227
Class
:
Mainly Beta
(13760)
Architecture
:
3 Solenoid
(196)
Topology
:
UDP N-Acetylglucosamine Acyltransferase; domain 1
(90)
Homologous Superfamily
:
Hexapeptide repeat proteins
(85)
Haemophilus influenzae. Organism_taxid: 727
(5)
2a
2v0iA02
A:228-454
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Pfam Domains
(2, 5)
Info
all PFAM domains
1a: PFAM_NTP_transf_3_2v0iA01 (A:8-258)
2a: PFAM_Hexapep_2v0iA02 (A:394-429)
2b: PFAM_Hexapep_2v0iA03 (A:394-429)
2c: PFAM_Hexapep_2v0iA04 (A:394-429)
2d: PFAM_Hexapep_2v0iA05 (A:394-429)
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Clans
(
)
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)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
GT-A
(172)
Family
:
NTP_transf_3
(13)
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
(7)
1a
NTP_transf_3-2v0iA01
A:8-258
Clan
:
no clan defined [family: Hexapep]
(52)
Family
:
Hexapep
(52)
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
(10)
2a
Hexapep-2v0iA02
A:394-429
2b
Hexapep-2v0iA03
A:394-429
2c
Hexapep-2v0iA04
A:394-429
2d
Hexapep-2v0iA05
A:394-429
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Chain A
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
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