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2UZY
Biol. Unit 1
Info
Asym.Unit (296 KB)
Biol.Unit 1 (150 KB)
Biol.Unit 2 (149 KB)
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(1)
Title
:
STRUCTURE OF THE HUMAN RECEPTOR TYROSINE KINASE MET IN COMPLEX WITH THE LISTERIA MONOCYTOGENES INVASION PROTEIN INLB: LOW RESOLUTION, CRYSTAL FORM II
Authors
:
H. H. Niemann, V. Jager, P. J. G. Butler, J. Van Den Heuvel, S. Schmidt, D. Ferraris, E. Gherardi, D. W. Heinz
Date
:
02 May 07 (Deposition) - 07 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Signaling Protein/Receptor, Leucine Rich Repeat, Receptor Ectodomain, Hepatocyte Growth Factor Receptor, Atp-Binding, Transferase, Polymorphism, Glycoprotein, Virulence Factor, Disease Mutation, Nucleotide-Binding, Transmembrane, Proto-Oncogene, Phosphorylation, Leucine-Rich Repeat, Alternative Splicing, Tyrosine-Protein Kinase, Chromosomal Rearrangement, Lrr, Hgfr, Kinase, Membrane, Receptor, Internalin, Signaling Protein/Receptor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
H. H. Niemann, V. Jager, P. J. G. Butler, J. Van Den Heuvel, S. Schmidt, D. Ferraris, E. Gherardi, D. W. Heinz
Structure Of The Human Receptor Tyrosine Kinase Met In Complex With The Listeria Invasion Protein Inlb
Cell(Cambridge, Mass. ) V. 130 235 2007
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(9, 9)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_041738 (R143Q, chain B, )
2: VAR_064855 (H150Y, chain B, )
3: VAR_041739 (S156L, chain B, )
4: VAR_041740 (E168D, chain B, )
5: VAR_032478 (L238S, chain B, )
6: VAR_032479 (I316M, chain B, )
7: VAR_006285 (A320V, chain B, )
8: VAR_032480 (N375S, chain B, )
9: VAR_064856 (C385Y, chain B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041738
R
143
Q
MET_HUMAN
Polymorphism
35469582
B
R
143
Q
2
UniProt
VAR_064855
H
150
Y
MET_HUMAN
Unclassified
---
B
H
150
Y
3
UniProt
VAR_041739
S
156
L
MET_HUMAN
Polymorphism
56311081
B
S
156
L
4
UniProt
VAR_041740
E
168
D
MET_HUMAN
Polymorphism
55985569
B
E
168
D
5
UniProt
VAR_032478
L
238
S
MET_HUMAN
Polymorphism
34349517
B
L
238
S
6
UniProt
VAR_032479
I
316
M
MET_HUMAN
Polymorphism
35225896
B
I
316
M
7
UniProt
VAR_006285
A
320
V
MET_HUMAN
Polymorphism
35776110
B
A
320
V
8
UniProt
VAR_032480
N
375
S
MET_HUMAN
Polymorphism
33917957
B
N
375
S
9
UniProt
VAR_064856
C
385
Y
MET_HUMAN
Unclassified
---
B
C
385
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: LRR (A:99-120,A:121-142,A:143-164,A:165...)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
INLB_LISMO
99-120
121-142
143-164
165-186
187-208
209-230
6
A:99-120
-
A:121-142
-
A:143-164
-
A:165-186
-
A:187-208
-
A:209-230
-
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
(5, 12)
Info
all CATH domains
1a: CATH_2uzyB02 (B:517-561)
1b: CATH_2uzyD02 (D:517-561)
2a: CATH_2uzyA01 (A:35-245)
2b: CATH_2uzyC01 (C:35-245)
3a: CATH_2uzyD01 (D:42-516)
3b: CATH_2uzyB01 (B:42-516)
4a: CATH_2uzyA02 (A:246-320)
4b: CATH_2uzyC02 (C:246-320)
5a: CATH_2uzyB03 (B:562-654)
5b: CATH_2uzyD03 (D:562-654)
5c: CATH_2uzyB04 (B:655-741)
5d: CATH_2uzyD04 (D:655-741)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
ligand-binding face of the semaphorins, domain 2
(4)
Homologous Superfamily
:
ligand-binding face of the semaphorins, domain 2
(4)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e. Variant: serovar 12a.
(1)
1a
2uzyB02
B:517-561
1b
2uzyD02
D:517-561
Architecture
:
Alpha-Beta Horseshoe
(92)
Topology
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(73)
Homologous Superfamily
:
Ribonuclease Inhibitor
(73)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e. Variant: serovar 12a.
(2)
2a
2uzyA01
A:35-245
2b
2uzyC01
C:35-245
Class
:
Mainly Beta
(13760)
Architecture
:
7 Propellor
(136)
Topology
:
Methylamine Dehydrogenase; Chain H
(136)
Homologous Superfamily
:
YVTN repeat-like/Quinoprotein amine dehydrogenase
(76)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e. Variant: serovar 12a.
(2)
3a
2uzyD01
D:42-516
3b
2uzyB01
B:42-516
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1220, no name defined]
(28)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e. Variant: serovar 12a.
(2)
4a
2uzyA02
A:246-320
4b
2uzyC02
C:246-320
Homologous Superfamily
:
Immunoglobulins
(2282)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e. Variant: serovar 12a.
(2)
5a
2uzyB03
B:562-654
5b
2uzyD03
D:562-654
5c
2uzyB04
B:655-741
5d
2uzyD04
D:655-741
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Pfam Domains
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Asym.Unit (296 KB)
Header - Asym.Unit
Biol.Unit 1 (150 KB)
Header - Biol.Unit 1
Biol.Unit 2 (149 KB)
Header - Biol.Unit 2
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