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2UZY
Asym. Unit
Info
Asym.Unit (296 KB)
Biol.Unit 1 (150 KB)
Biol.Unit 2 (149 KB)
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(1)
Title
:
STRUCTURE OF THE HUMAN RECEPTOR TYROSINE KINASE MET IN COMPLEX WITH THE LISTERIA MONOCYTOGENES INVASION PROTEIN INLB: LOW RESOLUTION, CRYSTAL FORM II
Authors
:
H. H. Niemann, V. Jager, P. J. G. Butler, J. Van Den Heuvel, S. Schmidt, D. Ferraris, E. Gherardi, D. W. Heinz
Date
:
02 May 07 (Deposition) - 07 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Signaling Protein/Receptor, Leucine Rich Repeat, Receptor Ectodomain, Hepatocyte Growth Factor Receptor, Atp-Binding, Transferase, Polymorphism, Glycoprotein, Virulence Factor, Disease Mutation, Nucleotide-Binding, Transmembrane, Proto-Oncogene, Phosphorylation, Leucine-Rich Repeat, Alternative Splicing, Tyrosine-Protein Kinase, Chromosomal Rearrangement, Lrr, Hgfr, Kinase, Membrane, Receptor, Internalin, Signaling Protein/Receptor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
H. H. Niemann, V. Jager, P. J. G. Butler, J. Van Den Heuvel, S. Schmidt, D. Ferraris, E. Gherardi, D. W. Heinz
Structure Of The Human Receptor Tyrosine Kinase Met In Complex With The Listeria Invasion Protein Inlb
Cell(Cambridge, Mass. ) V. 130 235 2007
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(9, 18)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041738 (R143Q, chain B/D, )
2: VAR_064855 (H150Y, chain B/D, )
3: VAR_041739 (S156L, chain B/D, )
4: VAR_041740 (E168D, chain B/D, )
5: VAR_032478 (L238S, chain B/D, )
6: VAR_032479 (I316M, chain B/D, )
7: VAR_006285 (A320V, chain B/D, )
8: VAR_032480 (N375S, chain B/D, )
9: VAR_064856 (C385Y, chain B/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041738
R
143
Q
MET_HUMAN
Polymorphism
35469582
B/D
R
143
Q
2
UniProt
VAR_064855
H
150
Y
MET_HUMAN
Unclassified
---
B/D
H
150
Y
3
UniProt
VAR_041739
S
156
L
MET_HUMAN
Polymorphism
56311081
B/D
S
156
L
4
UniProt
VAR_041740
E
168
D
MET_HUMAN
Polymorphism
55985569
B/D
E
168
D
5
UniProt
VAR_032478
L
238
S
MET_HUMAN
Polymorphism
34349517
B/D
L
238
S
6
UniProt
VAR_032479
I
316
M
MET_HUMAN
Polymorphism
35225896
B/D
I
316
M
7
UniProt
VAR_006285
A
320
V
MET_HUMAN
Polymorphism
35776110
B/D
A
320
V
8
UniProt
VAR_032480
N
375
S
MET_HUMAN
Polymorphism
33917957
B/D
N
375
S
9
UniProt
VAR_064856
C
385
Y
MET_HUMAN
Unclassified
---
B/D
C
385
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: LRR (A:99-120,C:99-120|A:121-142,C:121-...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
INLB_LISMO
99-120
121-142
143-164
165-186
187-208
209-230
12
A:99-120
C:99-120
A:121-142
C:121-142
A:143-164
C:143-164
A:165-186
C:165-186
A:187-208
C:187-208
A:209-230
C:209-230
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Exons
(8, 16)
Info
All Exons
Exon 1.3c (B:42-397 (gaps) | D:42-393 (gaps))
Exon 1.6 (B:407-464 (gaps) | D:414-464)
Exon 1.7 (B:465-509 | D:465-509)
Exon 1.8 (B:510-567 | D:510-567)
Exon 1.9b (B:568-621 | D:568-621)
Exon 1.10 (B:621-655 (gaps) | D:621-655 (gaps...)
Exon 1.11b (B:656-701 (gaps) | D:656-701 (gaps...)
Exon 1.12a (B:701-741 | D:701-741)
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All Exon Boundaries
1: Boundary 1.1c/1.3c
2: Boundary 1.3c/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.9b
6: Boundary 1.9b/1.10
7: Boundary 1.10/1.11b
8: Boundary 1.11b/1.12a
9: Boundary 1.12a/1.13b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000397752
1c
ENSE00001865305
chr7:
116312446-116312631
186
MET_HUMAN
-
0
0
-
-
1.3c
ENST00000397752
3c
ENSE00001238915
chr7:
116339125-116340338
1214
MET_HUMAN
1-400
400
2
B:42-397 (gaps)
D:42-393 (gaps)
356
352
1.6
ENST00000397752
6
ENSE00000717722
chr7:
116371722-116371913
192
MET_HUMAN
401-464
64
2
B:407-464 (gaps)
D:414-464
58
51
1.7
ENST00000397752
7
ENSE00000717724
chr7:
116380004-116380138
135
MET_HUMAN
465-509
45
2
B:465-509
D:465-509
45
45
1.8
ENST00000397752
8
ENSE00000717726
chr7:
116380906-116381079
174
MET_HUMAN
510-567
58
2
B:510-567
D:510-567
58
58
1.9b
ENST00000397752
9b
ENSE00000717728
chr7:
116395409-116395569
161
MET_HUMAN
568-621
54
2
B:568-621
D:568-621
54
54
1.10
ENST00000397752
10
ENSE00000717730
chr7:
116397491-116397593
103
MET_HUMAN
621-655
35
2
B:621-655 (gaps)
D:621-655 (gaps)
35
35
1.11b
ENST00000397752
11b
ENSE00000717732
chr7:
116397692-116397828
137
MET_HUMAN
656-701
46
2
B:656-701 (gaps)
D:656-701 (gaps)
46
46
1.12a
ENST00000397752
12a
ENSE00000717735
chr7:
116398513-116398674
162
MET_HUMAN
701-755
55
2
B:701-741
D:701-741
41
41
1.13b
ENST00000397752
13b
ENSE00001530016
chr7:
116399445-116399544
100
MET_HUMAN
755-788
34
0
-
-
1.14
ENST00000397752
14
ENSE00000717791
chr7:
116403104-116403322
219
MET_HUMAN
789-861
73
0
-
-
1.15a
ENST00000397752
15a
ENSE00000717803
chr7:
116409699-116409845
147
MET_HUMAN
862-910
49
0
-
-
1.16
ENST00000397752
16
ENSE00000717811
chr7:
116411552-116411708
157
MET_HUMAN
911-963
53
0
-
-
1.17
ENST00000397752
17
ENSE00000717833
chr7:
116411903-116412043
141
MET_HUMAN
963-1010
48
0
-
-
1.18b
ENST00000397752
18b
ENSE00000717861
chr7:
116414935-116415165
231
MET_HUMAN
1010-1087
78
0
-
-
1.19
ENST00000397752
19
ENSE00000717879
chr7:
116417443-116417523
81
MET_HUMAN
1087-1114
28
0
-
-
1.20
ENST00000397752
20
ENSE00000717895
chr7:
116418830-116419011
182
MET_HUMAN
1114-1174
61
0
-
-
1.21
ENST00000397752
21
ENSE00000717902
chr7:
116422042-116422151
110
MET_HUMAN
1175-1211
37
0
-
-
1.22
ENST00000397752
22
ENSE00000717928
chr7:
116423358-116423523
166
MET_HUMAN
1211-1266
56
0
-
-
1.23
ENST00000397752
23
ENSE00000717937
chr7:
116435709-116435845
137
MET_HUMAN
1267-1312
46
0
-
-
1.24b
ENST00000397752
24b
ENSE00000881894
chr7:
116435941-116438440
2500
MET_HUMAN
1312-1390
79
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
(5, 12)
Info
all CATH domains
1a: CATH_2uzyB02 (B:517-561)
1b: CATH_2uzyD02 (D:517-561)
2a: CATH_2uzyA01 (A:35-245)
2b: CATH_2uzyC01 (C:35-245)
3a: CATH_2uzyD01 (D:42-516)
3b: CATH_2uzyB01 (B:42-516)
4a: CATH_2uzyA02 (A:246-320)
4b: CATH_2uzyC02 (C:246-320)
5a: CATH_2uzyB03 (B:562-654)
5b: CATH_2uzyD03 (D:562-654)
5c: CATH_2uzyB04 (B:655-741)
5d: CATH_2uzyD04 (D:655-741)
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Homologous Superfamilies
(
)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
ligand-binding face of the semaphorins, domain 2
(4)
Homologous Superfamily
:
ligand-binding face of the semaphorins, domain 2
(4)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e. Variant: serovar 12a.
(1)
1a
2uzyB02
B:517-561
1b
2uzyD02
D:517-561
Architecture
:
Alpha-Beta Horseshoe
(92)
Topology
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(73)
Homologous Superfamily
:
Ribonuclease Inhibitor
(73)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e. Variant: serovar 12a.
(2)
2a
2uzyA01
A:35-245
2b
2uzyC01
C:35-245
Class
:
Mainly Beta
(13760)
Architecture
:
7 Propellor
(136)
Topology
:
Methylamine Dehydrogenase; Chain H
(136)
Homologous Superfamily
:
YVTN repeat-like/Quinoprotein amine dehydrogenase
(76)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e. Variant: serovar 12a.
(2)
3a
2uzyD01
D:42-516
3b
2uzyB01
B:42-516
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1220, no name defined]
(28)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e. Variant: serovar 12a.
(2)
4a
2uzyA02
A:246-320
4b
2uzyC02
C:246-320
Homologous Superfamily
:
Immunoglobulins
(2282)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e. Variant: serovar 12a.
(2)
5a
2uzyB03
B:562-654
5b
2uzyD03
D:562-654
5c
2uzyB04
B:655-741
5d
2uzyD04
D:655-741
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Pfam Domains
(0, 0)
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all PFAM domains
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