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2UZP
Asym. Unit
Info
Asym.Unit (94 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (31 KB)
Biol.Unit 3 (31 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C2 DOMAIN OF HUMAN PROTEIN KINASE C GAMMA.
Authors
:
A. C. W. Pike, A. Amos, C. Johansson, F. Sobott, P. Savitsky, G. Berridge O. Fedorov, C. Umeano, F. Gorrec, G. Bunkoczi, J. Debreczeni, F. Von D C. H. Arrowsmith, A. Edwards, J. Weigelt, M. Sundstrom, S. Knapp
Date
:
30 Apr 07 (Deposition) - 29 May 07 (Release) - 19 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Transferase, Metal-Binding, Kinase, Zinc-Finger, Atp-Binding, Spinocerebellar Ataxia, Calcium-Binding Protein, Serine/Threonine-Protein Kinase, Phospholipid Binding Protein, Nucleotide-Binding, Phorbol- Ester Binding, Phosphorylation, Protein Kinase C, Neurodegeneration
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. C. W. Pike, A. Amos, C. Johansson, F. Sobott, P. Savitsky, G. Berridge, O. Fedorov, C. Umeano, F. Gorrec, G. Bunkoczi, J. Debreczeni, F. Von Delft, C. H. Arrowsmith, A. Edwards, J. Weigelt M. Sundstrom, S. Knapp
Crystal Structure Of C2 Domain Of Protein Kinase C Gamma
To Be Published
[
close entry info
]
Hetero Components
(6, 46)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
2a: COBALT (II) ION (COa)
2b: COBALT (II) ION (COb)
2c: COBALT (II) ION (COc)
3a: D-SERINE (DSNa)
3b: D-SERINE (DSNb)
3c: D-SERINE (DSNc)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
4d: 1,2-ETHANEDIOL (EDOd)
4e: 1,2-ETHANEDIOL (EDOe)
4f: 1,2-ETHANEDIOL (EDOf)
4g: 1,2-ETHANEDIOL (EDOg)
4h: 1,2-ETHANEDIOL (EDOh)
5a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
5b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
5c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
6l: SULFATE ION (SO4l)
6m: SULFATE ION (SO4m)
6n: SULFATE ION (SO4n)
6o: SULFATE ION (SO4o)
6p: SULFATE ION (SO4p)
6q: SULFATE ION (SO4q)
6r: SULFATE ION (SO4r)
6s: SULFATE ION (SO4s)
6t: SULFATE ION (SO4t)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
9
Ligand/Ion
CALCIUM ION
2
CO
3
Ligand/Ion
COBALT (II) ION
3
DSN
3
Mod. Amino Acid
D-SERINE
4
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
5
PLP
3
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
6
SO4
20
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(46, 46)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:0 , HIS A:154 , PLP A:1294 , CO A:1295 , HOH A:2134 , ARG B:249
BINDING SITE FOR RESIDUE DSN A -1
02
AC2
SOFTWARE
GLU A:237 , MET B:0 , HIS B:154 , PLP B:1294 , CO B:1295 , HOH B:2099 , ARG C:249
BINDING SITE FOR RESIDUE DSN B -1
03
AC3
SOFTWARE
LYS A:232 , ARG A:249 , MET C:0 , HIS C:154 , PLP C:1294 , CO C:1295 , HOH C:2114 , HOH C:2120
BINDING SITE FOR RESIDUE DSN C -1
04
AC4
SOFTWARE
DSN A:-1 , MET A:0 , HIS A:154 , PLP A:1294 , HOH A:2134
BINDING SITE FOR RESIDUE CO A1295
05
AC5
SOFTWARE
ASP A:187 , ASP A:193 , ASP A:246 , TRP A:247 , ASP A:248 , HOH A:2036
BINDING SITE FOR RESIDUE CA A1296
06
AC6
SOFTWARE
MET A:186 , ASP A:187 , ASP A:246 , ASP A:248 , ASP A:254 , SO4 A:1299
BINDING SITE FOR RESIDUE CA A1297
07
AC7
SOFTWARE
ASP A:248 , SER A:251 , ARG A:252 , ASP A:254 , HOH B:2075 , HOH B:2076
BINDING SITE FOR RESIDUE CA A1298
08
AC8
SOFTWARE
MET A:186 , ASP A:187 , PRO A:188 , ASP A:248 , SER A:251 , ASP A:254 , CA A:1297 , HOH A:2098 , HOH A:2135 , HOH A:2136 , ARG B:158 , HOH B:2075
BINDING SITE FOR RESIDUE SO4 A1299
09
AC9
SOFTWARE
ARG A:239 , PHE A:261 , GLY A:262 , GLU A:265 , ASN A:287 , HOH A:2138 , HOH A:2140
BINDING SITE FOR RESIDUE SO4 A1300
10
BC1
SOFTWARE
ARG A:157 , ARG A:158 , ASN A:279 , HOH A:2122 , HOH A:2141 , HOH A:2142 , HOH A:2143
BINDING SITE FOR RESIDUE SO4 A1301
11
BC2
SOFTWARE
TYR A:195 , LYS A:197 , LYS A:209 , LYS A:211 , ASN A:253 , EDO A:1305
BINDING SITE FOR RESIDUE SO4 A1302
12
BC3
SOFTWARE
TRP A:245 , ARG A:252 , GLN A:280 , HOH A:2118 , HOH A:2145
BINDING SITE FOR RESIDUE SO4 A1303
13
BC4
SOFTWARE
MET A:0 , HIS A:154 , THR A:155 , ARG A:157 , LYS A:276 , HOH A:2134
BINDING SITE FOR RESIDUE SO4 A1304
14
BC5
SOFTWARE
DSN B:-1 , MET B:0 , HIS B:154 , PLP B:1294 , HOH B:2099
BINDING SITE FOR RESIDUE CO B1295
15
BC6
SOFTWARE
HOH A:2101 , HOH A:2102 , ASP B:248 , SER B:251 , ARG B:252 , ASP B:254
BINDING SITE FOR RESIDUE CA B1296
16
BC7
SOFTWARE
ASP B:187 , ASP B:193 , ASP B:246 , TRP B:247 , ASP B:248 , HOH B:2028
BINDING SITE FOR RESIDUE CA B1297
17
BC8
SOFTWARE
MET B:186 , ASP B:187 , ASP B:246 , ASP B:248 , ASP B:254 , SO4 B:1299
BINDING SITE FOR RESIDUE CA B1298
18
BC9
SOFTWARE
ARG A:158 , PHE A:255 , HOH A:2102 , MET B:186 , ASP B:187 , PRO B:188 , ASP B:248 , SER B:251 , CA B:1298 , HOH B:2073 , HOH B:2100 , HOH B:2101
BINDING SITE FOR RESIDUE SO4 B1299
19
CC1
SOFTWARE
ARG B:239 , GLY B:262 , GLU B:265 , ASN B:287 , HOH B:2103
BINDING SITE FOR RESIDUE SO4 B1300
20
CC2
SOFTWARE
ARG B:181 , ASN B:182 , HOH B:2105 , HOH B:2106 , HOH B:2107 , HOH B:2108 , THR C:218 , HOH C:2053
BINDING SITE FOR RESIDUE SO4 B1301
21
CC3
SOFTWARE
MET B:0 , HIS B:154 , THR B:155 , ARG B:157 , LYS B:276
BINDING SITE FOR RESIDUE SO4 B1302
22
CC4
SOFTWARE
ARG A:252 , TRP B:245 , ARG B:252 , GLN B:280 , HOH B:2087 , HOH B:2110
BINDING SITE FOR RESIDUE SO4 B1303
23
CC5
SOFTWARE
TYR B:195 , LYS B:209 , LYS B:211 , EDO B:1307
BINDING SITE FOR RESIDUE SO4 B1304
24
CC6
SOFTWARE
ARG B:157 , ARG B:158 , ASN B:279 , ARG C:157
BINDING SITE FOR RESIDUE SO4 B1305
25
CC7
SOFTWARE
DSN C:-1 , MET C:0 , HIS C:154 , PLP C:1294 , HOH C:2114
BINDING SITE FOR RESIDUE CO C1295
26
CC8
SOFTWARE
ASP C:187 , ASP C:193 , ASP C:246 , TRP C:247 , ASP C:248 , HOH C:2029
BINDING SITE FOR RESIDUE CA C1296
27
CC9
SOFTWARE
ASP C:248 , SER C:251 , ARG C:252 , ASP C:254 , HOH C:2084 , HOH C:2085
BINDING SITE FOR RESIDUE CA C1297
28
DC1
SOFTWARE
MET C:186 , ASP C:187 , ASP C:246 , ASP C:248 , ASP C:254 , SO4 C:1299
BINDING SITE FOR RESIDUE CA C1298
29
DC2
SOFTWARE
ARG C:158 , MET C:186 , ASP C:187 , PRO C:188 , ASP C:248 , SER C:251 , PHE C:255 , CA C:1298 , HOH C:2080 , HOH C:2084 , HOH C:2115 , HOH C:2117
BINDING SITE FOR RESIDUE SO4 C1299
30
DC3
SOFTWARE
HOH A:2018 , HOH A:2019 , ARG C:239 , PHE C:261 , GLY C:262 , GLU C:265 , ASN C:287 , HOH C:2118
BINDING SITE FOR RESIDUE SO4 C1300
31
DC4
SOFTWARE
MET C:0 , HIS C:154 , THR C:155 , ARG C:157 , LYS C:276 , HOH C:2120
BINDING SITE FOR RESIDUE SO4 C1301
32
DC5
SOFTWARE
ARG B:157 , ARG C:157 , ARG C:158 , ASN C:279 , HOH C:2122
BINDING SITE FOR RESIDUE SO4 C1302
33
DC6
SOFTWARE
TYR C:195 , LYS C:197 , LYS C:209 , LYS C:211 , EDO C:1308
BINDING SITE FOR RESIDUE SO4 C1303
34
DC7
SOFTWARE
TRP C:245 , ARG C:252 , GLN C:280 , HOH C:2074 , HOH C:2081 , HOH C:2124
BINDING SITE FOR RESIDUE SO4 C1304
35
DC8
SOFTWARE
THR A:218 , HOH A:2061 , HOH A:2062 , ARG C:181 , ASN C:182 , HOH C:2054 , HOH C:2126 , HOH C:2127 , HOH C:2128
BINDING SITE FOR RESIDUE SO4 C1305
36
DC9
SOFTWARE
DSN A:-1 , MET A:0 , HIS A:154 , ALA A:291 , CO A:1295 , HOH A:2134 , LYS B:216 , ARG B:249
BINDING SITE FOR RESIDUE PLP A1294
37
EC1
SOFTWARE
TYR A:195 , LYS A:197 , ARG A:252 , SO4 A:1302 , EDO A:1306
BINDING SITE FOR RESIDUE EDO A1305
38
EC2
SOFTWARE
ARG A:252 , ASN A:253 , EDO A:1305
BINDING SITE FOR RESIDUE EDO A1306
39
EC3
SOFTWARE
DSN B:-1 , MET B:0 , HIS B:154 , ALA B:291 , CO B:1295 , HOH B:2099 , LYS C:216 , TRP C:247 , ARG C:249 , EDO C:1307
BINDING SITE FOR RESIDUE PLP B1294
40
EC4
SOFTWARE
HIS A:154 , GLU A:156 , ASN B:189 , ASP B:193 , HOH B:2113 , HOH B:2114
BINDING SITE FOR RESIDUE EDO B1306
41
EC5
SOFTWARE
LYS B:197 , TRP B:245 , ARG B:252 , SO4 B:1304 , HOH B:2115
BINDING SITE FOR RESIDUE EDO B1307
42
EC6
SOFTWARE
LYS A:216 , TRP A:247 , ARG A:249 , DSN C:-1 , MET C:0 , HIS C:154 , THR C:155 , ALA C:291 , CO C:1295 , EDO C:1306 , HOH C:2112 , HOH C:2114
BINDING SITE FOR RESIDUE PLP C1294
43
EC7
SOFTWARE
ASN A:189 , ASP A:193 , LYS A:216 , HIS C:154 , GLU C:156 , PLP C:1294 , HOH C:2129 , HOH C:2130
BINDING SITE FOR RESIDUE EDO C1306
44
EC8
SOFTWARE
THR B:155 , GLU B:156 , PLP B:1294 , ASN C:189 , ASP C:193 , ALA C:217 , HOH C:2131 , HOH C:2132
BINDING SITE FOR RESIDUE EDO C1307
45
EC9
SOFTWARE
LYS C:197 , ARG C:252 , SO4 C:1303 , EDO C:1309
BINDING SITE FOR RESIDUE EDO C1308
46
FC1
SOFTWARE
ARG C:252 , ASN C:253 , EDO C:1308
BINDING SITE FOR RESIDUE EDO C1309
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: C2 (A:170-260,B:170-260,C:170-260)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C2
PS50004
C2 domain profile.
KPCG_HUMAN
170-260
3
A:170-260
B:170-260
C:170-260
[
close PROSITE info
]
Exons
(4, 12)
Info
All Exons
Exon 1.7c (A:-1-177 | B:-1-177 | C:-1-177)
Exon 1.8b (A:177-229 | B:177-229 | C:177-229)
Exon 1.9 (A:229-274 | B:229-274 | C:229-274)
Exon 1.10 (A:274-293 | B:274-293 | C:274-293)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.6/1.7c
2: Boundary 1.7c/1.8b
3: Boundary 1.8b/1.9
4: Boundary 1.9/1.10
5: Boundary 1.10/1.11
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000263431
3a
ENSE00001245754
chr19:
54385467-54385918
452
KPCG_HUMAN
1-57
57
0
-
-
1.4
ENST00000263431
4
ENSE00000724605
chr19:
54386417-54386448
32
KPCG_HUMAN
57-68
12
0
-
-
1.5
ENST00000263431
5
ENSE00000724928
chr19:
54387415-54387497
83
KPCG_HUMAN
68-95
28
0
-
-
1.6
ENST00000263431
6
ENSE00000895310
chr19:
54392892-54393003
112
KPCG_HUMAN
96-133
38
0
-
-
1.7c
ENST00000263431
7c
ENSE00000895309
chr19:
54393140-54393271
132
KPCG_HUMAN
133-177
45
3
A:-1-177
B:-1-177
C:-1-177
26
26
26
1.8b
ENST00000263431
8b
ENSE00001245692
chr19:
54394928-54395084
157
KPCG_HUMAN
177-229
53
3
A:177-229
B:177-229
C:177-229
53
53
53
1.9
ENST00000263431
9
ENSE00000724715
chr19:
54395763-54395897
135
KPCG_HUMAN
229-274
46
3
A:229-274
B:229-274
C:229-274
46
46
46
1.10
ENST00000263431
10
ENSE00000724731
chr19:
54396242-54396329
88
KPCG_HUMAN
274-303
30
3
A:274-293
B:274-293
C:274-293
20
20
20
1.11
ENST00000263431
11
ENSE00000895305
chr19:
54396616-54396645
30
KPCG_HUMAN
304-313
10
0
-
-
1.12
ENST00000263431
12
ENSE00000895303
chr19:
54401213-54401365
153
KPCG_HUMAN
314-364
51
0
-
-
1.13
ENST00000263431
13
ENSE00000895302
chr19:
54401694-54401882
189
KPCG_HUMAN
365-427
63
0
-
-
1.14
ENST00000263431
14
ENSE00000895299
chr19:
54403487-54403578
92
KPCG_HUMAN
428-458
31
0
-
-
1.15
ENST00000263431
15
ENSE00000895298
chr19:
54403673-54403735
63
KPCG_HUMAN
458-479
22
0
-
-
1.16
ENST00000263431
16
ENSE00000895297
chr19:
54403865-54404003
139
KPCG_HUMAN
479-525
47
0
-
-
1.17
ENST00000263431
17
ENSE00001744994
chr19:
54406327-54406407
81
KPCG_HUMAN
526-552
27
0
-
-
1.18
ENST00000263431
18
ENSE00001245768
chr19:
54407889-54407996
108
KPCG_HUMAN
553-588
36
0
-
-
1.19
ENST00000263431
19
ENSE00000895287
chr19:
54409571-54409711
141
KPCG_HUMAN
589-635
47
0
-
-
1.20
ENST00000263431
20
ENSE00000954002
chr19:
54409961-54410906
946
KPCG_HUMAN
636-697
62
0
-
-
[
close EXON info
]
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2uzpa_ (A:)
1b: SCOP_d2uzpb_ (B:)
1c: SCOP_d2uzpc_ (C:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
C2 domain-like
(198)
Superfamily
:
C2 domain (Calcium/lipid-binding domain, CaLB)
(148)
Family
:
Synaptotagmin-like (S variant)
(38)
Protein domain
:
automated matches
(6)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2uzpa_
A:
1b
d2uzpb_
B:
1c
d2uzpc_
C:
[
close SCOP info
]
CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2uzpA00 (A:0-293)
1b: CATH_2uzpB00 (B:0-293)
1c: CATH_2uzpC00 (C:0-293)
View:
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Classes
(
)
(
)
Architectures
(
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
C2- domain Calcium/lipid binding domain
(78)
Human (Homo sapiens)
(41)
1a
2uzpA00
A:0-293
1b
2uzpB00
B:0-293
1c
2uzpC00
C:0-293
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Asymmetric Unit 1
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (94 KB)
Header - Asym.Unit
Biol.Unit 1 (32 KB)
Header - Biol.Unit 1
Biol.Unit 2 (31 KB)
Header - Biol.Unit 2
Biol.Unit 3 (31 KB)
Header - Biol.Unit 3
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