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2UYZ
Asym. Unit
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Asym.Unit (108 KB)
Biol.Unit 1 (102 KB)
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(1)
Title
:
NON-COVALENT COMPLEX BETWEEN UBC9 AND SUMO1
Authors
:
P. Knipscheer, W. J. Van Dijk, J. V. Olsen, M. Mann, T. K. Sixma
Date
:
21 Apr 07 (Deposition) - 12 Jun 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Sumoylation, Cell Division, Nuclear Protein, Ubiquitin-Like Modifier, Ubl Conjugation Pathway, Conjugating Enzyme, Chromosome Partition, E2, Ubc9, Sumo1, Ligase, Mitosis, Cell Cycle
(Keyword Search:
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)
Reference
:
P. Knipscheer, W. J. Van Dijk, J. V. Olsen, M. Mann, T. K. Sixma
Noncovalent Interaction Between Ubc9 And Sumo Promotes Sumo Chain Formation.
Embo J. V. 26 2797 2007
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: SODIUM ION (NAa)
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Label:
No.
Name
Count
Type
Full Name
1
NA
1
Ligand/Ion
SODIUM ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:87 , SER A:93 , GLU A:98 , HOH A:2140 , HOH A:2154 , HOH A:2157
BINDING SITE FOR RESIDUE NA A1159
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_CONJUGAT_2 (A:7-146)
2: UBIQUITIN_2 (B:20-96)
3: UBIQUITIN_CONJUGAT_1 (A:82-97)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_CONJUGAT_2
PS50127
Ubiquitin-conjugating enzymes family profile.
UBC9_MOUSE
7-146
1
A:7-146
2
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
SUMO1_HUMAN
20-97
1
B:20-96
3
UBIQUITIN_CONJUGAT_1
PS00183
Ubiquitin-conjugating enzymes active site.
UBC9_MOUSE
82-97
1
A:82-97
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Exons
(4, 4)
Info
All Exons
Exon 1.5 (B:20-29)
Exon 1.6b (B:30-55)
Exon 1.7b (B:56-79)
Exon 1.9j (B:80-96)
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All Exon Boundaries
1: Boundary 1.1a/1.5
2: Boundary 1.5/1.6b
3: Boundary 1.6b/1.7b
4: Boundary 1.7b/1.9j
5: Boundary 1.9j/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000392246
1a
ENSE00001771214
chr2:
203103331-203103163
169
SUMO1_HUMAN
1-4
4
0
-
-
1.5
ENST00000392246
5
ENSE00001634753
chr2:
203084829-203084755
75
SUMO1_HUMAN
5-29
25
1
B:20-29
10
1.6b
ENST00000392246
6b
ENSE00001733147
chr2:
203079157-203079080
78
SUMO1_HUMAN
30-55
26
1
B:30-55
26
1.7b
ENST00000392246
7b
ENSE00001777388
chr2:
203075529-203075458
72
SUMO1_HUMAN
56-79
24
1
B:56-79
24
1.9j
ENST00000392246
9j
ENSE00001390654
chr2:
203072044-203070903
1142
SUMO1_HUMAN
80-101
22
1
B:80-96
17
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2uyzb_ (B:)
2a: SCOP_d2uyza1 (A:3-158)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
automated matches
(55)
Protein domain
:
automated matches
(55)
Human (Homo sapiens) [TaxId: 9606]
(39)
1a
d2uyzb_
B:
Fold
:
UBC-like
(176)
Superfamily
:
UBC-like
(176)
Family
:
UBC-related
(135)
Protein domain
:
Ubiquitin conjugating enzyme, UBC
(84)
Human (Homo sapiens), ubc9 [TaxId: 9606]
(20)
2a
d2uyza1
A:3-158
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2uyzA00 (A:3-158)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin Conjugating Enzyme
(83)
Homologous Superfamily
:
Ubiquitin Conjugating Enzyme
(83)
Mouse (Mus musculus)
(4)
1a
2uyzA00
A:3-158
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_UQ_con_2uyzA01 (A:8-152)
2a: PFAM_Rad60_SLD_2uyzB01 (B:22-92)
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Clans
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Clan
:
UBC
(69)
Family
:
UQ_con
(55)
Mus musculus (Mouse)
(3)
1a
UQ_con-2uyzA01
A:8-152
Clan
:
Ubiquitin
(279)
Family
:
Rad60-SLD
(17)
Homo sapiens (Human)
(16)
2a
Rad60-SLD-2uyzB01
B:22-92
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Asymmetric Unit 1
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