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2UYW
Biol. Unit 1
Info
Asym.Unit (52 KB)
Biol.Unit 1 (90 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF XENAVIDIN
Authors
:
S. H. Helppolainen, J. A. E. Maatta, T. T. Airenne, M. S. Johnson, M. S. Ku H. R. Nordlund
Date
:
20 Apr 07 (Deposition) - 27 May 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,D
Biol. Unit 1: A,D (2x)
Keywords
:
Avidin, Beta-Barrel, Biotin-Binding Protein, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. A. E. Maatta, S. H. Helppolainen, V. P. Hytonen, M. S. Johnson, M. S. Kulomaa, T. T. Airenne, H. R. Nordlund
Structural And Functional Characteristics Of Xenavidin, The First Frog Avidin From Xenopus Tropicalis.
Bmc Struct. Biol. V. 9 63 2009
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Hetero Components
(2, 24)
Info
All Hetero Components
1a: BIOTIN (BTNa)
1b: BIOTIN (BTNb)
2a: FORMIC ACID (FMTa)
2b: FORMIC ACID (FMTb)
2c: FORMIC ACID (FMTc)
2d: FORMIC ACID (FMTd)
2e: FORMIC ACID (FMTe)
2f: FORMIC ACID (FMTf)
2g: FORMIC ACID (FMTg)
2h: FORMIC ACID (FMTh)
2i: FORMIC ACID (FMTi)
2j: FORMIC ACID (FMTj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BTN
4
Ligand/Ion
BIOTIN
2
FMT
20
Ligand/Ion
FORMIC ACID
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:14 , LEU A:16 , SER A:18 , TYR A:35 , THR A:37 , VAL A:39 , SER A:40 , LEU A:41 , TRP A:69 , SER A:72 , SER A:74 , THR A:76 , TRP A:96 , ASN A:117 , HOH A:2066 , TRP D:109
BINDING SITE FOR RESIDUE BTN A1123
02
AC2
SOFTWARE
TRP A:109 , ASN D:14 , LEU D:16 , SER D:18 , TYR D:35 , THR D:37 , VAL D:39 , SER D:40 , LEU D:41 , TRP D:69 , SER D:72 , SER D:74 , THR D:76 , TRP D:96 , ASN D:117 , HOH D:2045 , HOH D:2111
BINDING SITE FOR RESIDUE BTN D1124
03
AC3
SOFTWARE
ASN D:14 , LYS D:15 , ALA D:116 , ASN D:117 , THR D:118 , HOH D:2112 , HOH D:2113
BINDING SITE FOR RESIDUE FMT D1125
04
AC4
SOFTWARE
ASN A:14 , LYS A:15 , ALA A:116 , ASN A:117 , THR A:118 , HOH A:2096 , HOH A:2099
BINDING SITE FOR RESIDUE FMT A1124
05
AC5
SOFTWARE
HIS A:68 , LEU D:57 , HOH D:2115 , HOH D:2116
BINDING SITE FOR RESIDUE FMT D1126
06
AC6
SOFTWARE
SER D:100 , GLN D:102 , ARG D:113 , HOH D:2117 , HOH D:2118
BINDING SITE FOR RESIDUE FMT D1127
07
AC7
SOFTWARE
GLU A:105 , GLN A:106 , ASN A:108 , TRP A:109 , HOH A:2100 , HOH A:2101 , LEU D:16
BINDING SITE FOR RESIDUE FMT A1125
08
AC8
SOFTWARE
GLY A:115 , ALA A:116 , HOH A:2074 , HOH A:2104 , HOH A:2105 , HOH A:2106
BINDING SITE FOR RESIDUE FMT A1128
09
AC9
SOFTWARE
SER D:24 , VAL D:25 , SER D:26 , GLU D:30 , PHE D:31
BINDING SITE FOR RESIDUE FMT D1128
10
BC1
SOFTWARE
LEU A:16 , GLU D:105 , GLN D:106 , ASN D:108 , TRP D:109 , HOH D:2097
BINDING SITE FOR RESIDUE FMT D1129
11
BC2
SOFTWARE
VAL A:39 , SER A:40 , THR A:42 , HOH A:2102 , HOH D:2099
BINDING SITE FOR RESIDUE FMT A1126
12
BC3
SOFTWARE
SER A:100 , GLN A:102 , ARG A:113 , HOH A:2093 , HOH A:2103
BINDING SITE FOR RESIDUE FMT A1127
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2uywa_ (A:)
1b: SCOP_d2uywd_ (D:)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Streptavidin-like
(225)
Superfamily
:
Avidin/streptavidin
(197)
Family
:
automated matches
(16)
Protein domain
:
automated matches
(16)
Western clawed frog (Xenopus tropicalis) [TaxId: 8364]
(2)
1a
d2uywa_
A:
1b
d2uywd_
D:
[
close SCOP info
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2uywA00 (A:4-122)
1b: CATH_2uywD00 (D:5-123)
View:
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Classes
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)
(
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Architectures
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Topologies
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Lipocalin
(526)
Homologous Superfamily
:
[code=2.40.128.30, no name defined]
(148)
Western clawed frog (Xenopus tropicalis)
(2)
1a
2uywA00
A:4-122
1b
2uywD00
D:5-123
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close CATH info
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Avidin_2uywD01 (D:6-121)
1b: PFAM_Avidin_2uywD02 (D:6-121)
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Clans
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)
(
)
Clan
:
no clan defined [family: Avidin]
(113)
Family
:
Avidin
(113)
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
(2)
1a
Avidin-2uywD01
D:6-121
1b
Avidin-2uywD02
D:6-121
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Asym.Unit (52 KB)
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