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2UYE
Asym. Unit
Info
Asym.Unit (84 KB)
Biol.Unit 1 (152 KB)
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(1)
Title
:
DOUBLE MUTANT Y110S,F111V DNTR FROM BURKHOLDERIA SP. STRAIN DNT IN COMPLEX WITH THIOCYANATE
Authors
:
R. Lonneborg, I. Smirova, C. Dian, G. A. Leonard, S. Mcsweeney, P. Brzezinski
Date
:
04 Apr 07 (Deposition) - 21 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Lttr, Lysr, Dna-Binding, Transcription, Transcription Regulation, Transcriptional Regulator
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Lonneborg, I. Smirova, C. Dian, G. A. Leonard, P. Brzezinski
In Vivo And In Vitro Investigation Of Transcriptional Regulation By Dntr.
J. Mol. Biol. V. 372 571 2007
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Hetero Components
(2, 15)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
2a: THIOCYANATE ION (SCNa)
2b: THIOCYANATE ION (SCNb)
2c: THIOCYANATE ION (SCNc)
2d: THIOCYANATE ION (SCNd)
2e: THIOCYANATE ION (SCNe)
2f: THIOCYANATE ION (SCNf)
2g: THIOCYANATE ION (SCNg)
2h: THIOCYANATE ION (SCNh)
2i: THIOCYANATE ION (SCNi)
2j: THIOCYANATE ION (SCNj)
2k: THIOCYANATE ION (SCNk)
2l: THIOCYANATE ION (SCNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
2
SCN
12
Ligand/Ion
THIOCYANATE ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:107 , SER A:110 , PHE A:167 , HIS A:169 , ILE A:273 , HOH A:2035 , HOH A:2109
BINDING SITE FOR RESIDUE SCN A1303
02
AC2
SOFTWARE
GLY B:107 , SER B:110 , PHE B:167 , HIS B:169 , ARG B:248 , HOH B:2060
BINDING SITE FOR RESIDUE SCN B1302
03
AC3
SOFTWARE
ASP B:210 , ARG B:220 , HOH B:2101
BINDING SITE FOR RESIDUE SCN B1303
04
AC4
SOFTWARE
ARG A:220 , HOH A:2110
BINDING SITE FOR RESIDUE SCN A1304
05
AC5
SOFTWARE
MET A:109 , PHE A:229 , ILE A:230 , ILE A:232 , GLY A:233 , PHE A:249 , ILE B:230
BINDING SITE FOR RESIDUE SCN A1305
06
AC6
SOFTWARE
ALA A:216 , ILE A:218 , LYS A:267 , HOH A:2111
BINDING SITE FOR RESIDUE SCN A1306
07
AC7
SOFTWARE
THR A:104 , GLY A:152 , LEU A:153 , GLY A:205 , HIS A:206 , HOH A:2112
BINDING SITE FOR RESIDUE SCN A1307
08
AC8
SOFTWARE
ARG A:164 , ARG A:291 , GLN A:292 , ARG B:122
BINDING SITE FOR RESIDUE SCN A1308
09
AC9
SOFTWARE
LEU B:153 , GLY B:205
BINDING SITE FOR RESIDUE SCN B1304
10
BC1
SOFTWARE
ASP B:105 , ALA B:201 , HIS B:206 , HIS B:228
BINDING SITE FOR RESIDUE SCN B1305
11
BC2
SOFTWARE
ASP A:105 , ASN A:134
BINDING SITE FOR RESIDUE SCN A1309
12
BC3
SOFTWARE
ARG A:165 , HOH A:2113 , PHE B:93 , ARG B:122 , TRP B:289 , HOH B:2023
BINDING SITE FOR RESIDUE SCN A1310
13
BC4
SOFTWARE
ASP A:105 , ARG A:132 , HIS A:228 , HOH A:2114 , ASP B:105 , HIS B:228 , ILE B:230 , HOH B:2018
BINDING SITE FOR RESIDUE GOL A1311
14
BC5
SOFTWARE
MET A:116 , ALA A:120 , GLU B:195 , ARG B:223 , THR B:239 , ASP B:240 , LEU B:241 , HOH B:2103
BINDING SITE FOR RESIDUE GOL B1306
15
BC6
SOFTWARE
GLU A:195 , ARG A:223 , THR A:239 , ASP A:240 , LEU A:241 , HOH A:2115 , MET B:116 , ALA B:120
BINDING SITE FOR RESIDUE GOL A1312
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2uyea_ (A:)
1b: SCOP_d2uyeb_ (B:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
automated matches
(76)
Burkholderia cepacia [TaxId: 292]
(2)
1a
d2uyea_
A:
1b
d2uyeb_
B:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2uyeB01 (B:76-170,B:270-301)
1b: CATH_2uyeA01 (A:88-170,A:270-302)
1c: CATH_2uyeA02 (A:171-269)
1d: CATH_2uyeB02 (B:171-269)
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Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Burkholderia cepacia. Organism_taxid: 292. Strain: strain dnt.
(2)
1a
2uyeB01
B:76-170,B:270-301
1b
2uyeA01
A:88-170,A:270-302
1c
2uyeA02
A:171-269
1d
2uyeB02
B:171-269
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_LysR_substrate_2uyeB01 (B:94-299)
1b: PFAM_LysR_substrate_2uyeB02 (B:94-299)
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Clan
:
PBP
(391)
Family
:
LysR_substrate
(13)
Burkholderia cepacia (Pseudomonas cepacia)
(2)
1a
LysR_substrate-2uyeB01
B:94-299
1b
LysR_substrate-2uyeB02
B:94-299
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Asymmetric Unit 1
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