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2UX9
Asym. Unit
Info
Asym.Unit (98 KB)
Biol.Unit 1 (170 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE T. THERMOPHILUS DODECIN R65A MUTANT
Authors
:
B. Meissner, L. -O. Essen
Date
:
27 Mar 07 (Deposition) - 11 Sep 07 (Release) - 03 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (2x)
Keywords
:
Flavoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Meissner, E. Schleicher, S. Weber, L. -O. Essen
The Dodecin From Thermus Thermophilus, A Bifunctional Cofactor Storage Protein.
J. Biol. Chem. V. 282 33142 2007
[
close entry info
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Hetero Components
(4, 19)
Info
All Hetero Components
1a: COENZYME A (COAa)
1b: COENZYME A (COAb)
1c: COENZYME A (COAc)
1d: COENZYME A (COAd)
1e: COENZYME A (COAe)
1f: COENZYME A (COAf)
2a: FLAVIN MONONUCLEOTIDE (FMNa)
2b: FLAVIN MONONUCLEOTIDE (FMNb)
2c: FLAVIN MONONUCLEOTIDE (FMNc)
2d: FLAVIN MONONUCLEOTIDE (FMNd)
2e: FLAVIN MONONUCLEOTIDE (FMNe)
2f: FLAVIN MONONUCLEOTIDE (FMNf)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
COA
6
Ligand/Ion
COENZYME A
2
FMN
6
Ligand/Ion
FLAVIN MONONUCLEOTIDE
3
NA
4
Ligand/Ion
SODIUM ION
4
PO4
3
Ligand/Ion
PHOSPHATE ION
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
FMN A:1069 , HOH A:2062
BINDING SITE FOR RESIDUE NA A1068
02
AC2
SOFTWARE
LYS A:3 , TYR A:5 , ASP A:37 , TRP A:38 , ALA A:65 , NA A:1068 , HOH A:2036 , HOH A:2063 , HOH A:2064 , HOH A:2065 , ARG C:45 , THR C:47 , GLN C:57
BINDING SITE FOR RESIDUE FMN A1069
03
AC3
SOFTWARE
ARG A:28 , THR A:32 , ARG A:34 , HIS A:35 , PHE A:64 , ALA A:65 , GLU A:67 , HOH A:2066 , LYS C:6 , COA C:1074 , HOH C:2080 , HOH C:2088 , LYS E:6 , VAL E:8 , LEU E:10 , ALA E:29 , LEU E:66 , COA E:1071
BINDING SITE FOR RESIDUE COA A1070
04
AC4
SOFTWARE
GLU B:9 , GLU B:43 , LYS F:7 , LYS F:42 , GLU F:61
BINDING SITE FOR RESIDUE PO4 B1069
05
AC5
SOFTWARE
LYS B:3 , TYR B:5 , ASP B:37 , TRP B:38 , ALA B:65 , HOH B:2084 , HOH B:2085 , HOH B:2086 , ARG D:45 , THR D:47 , GLN D:57
BINDING SITE FOR RESIDUE FMN B1070
06
AC6
SOFTWARE
GLU A:15 , GLU A:16 , ALA A:51 , LYS A:54 , HOH A:2055 , ARG B:28 , THR B:32 , LEU B:33 , ARG B:34 , HIS B:35 , PHE B:64 , ALA B:65 , GLU B:67 , HOH B:2087 , HOH B:2089 , HOH B:2090 , HOH B:2091 , HOH B:2092 , HOH B:2093 , LYS D:6 , LEU D:66 , COA D:1071 , LYS F:6 , VAL F:8 , ALA F:29 , LEU F:33 , PHE F:64 , LEU F:66 , COA F:1071 , HOH F:2087
BINDING SITE FOR RESIDUE COA B1071
07
AC7
SOFTWARE
LYS A:7 , LYS A:42 , GLU A:61 , GLU C:9 , LYS C:42 , GLU C:43
BINDING SITE FOR RESIDUE PO4 C1070
08
AC8
SOFTWARE
HOH A:2006 , GLU C:55 , HOH C:2062 , HOH C:2063
BINDING SITE FOR RESIDUE NA C1071
09
AC9
SOFTWARE
ASP C:37 , FMN C:1073 , HOH C:2044 , HOH C:2077 , HOH C:2079
BINDING SITE FOR RESIDUE NA C1072
10
BC1
SOFTWARE
LYS C:3 , TYR C:5 , ASP C:37 , TRP C:38 , ALA C:65 , NA C:1072 , HOH C:2076 , HOH C:2077 , HOH C:2078 , HOH C:2079 , FMN D:1070 , GLN E:57 , ARG F:45 , THR F:47 , GLN F:57
BINDING SITE FOR RESIDUE FMN C1073
11
BC2
SOFTWARE
LYS A:6 , VAL A:8 , LEU A:10 , ALA A:29 , LEU A:66 , COA A:1070 , HOH A:2066 , ARG C:28 , THR C:32 , LEU C:33 , ARG C:34 , PHE C:64 , ALA C:65 , LEU C:66 , GLU C:67 , HOH C:2080 , HOH C:2081 , HOH C:2082 , HOH C:2083 , HOH C:2084 , HOH C:2085 , HOH C:2086 , HOH C:2087 , HOH C:2088 , HOH C:2089 , HOH C:2090 , HOH D:2045 , LYS E:6 , GLU E:50 , LEU E:66 , COA E:1071 , HOH E:2064
BINDING SITE FOR RESIDUE COA C1074
12
BC3
SOFTWARE
FMN C:1073 , LYS D:3 , TYR D:5 , ASP D:37 , TRP D:38 , HOH D:2047 , HOH D:2076 , HOH D:2077 , THR E:32 , ARG E:45 , THR E:47 , GLN E:57 , HOH E:2046 , GLN F:57
BINDING SITE FOR RESIDUE FMN D1070
13
BC4
SOFTWARE
LYS B:6 , VAL B:8 , LEU B:10 , ARG B:28 , LEU B:66 , COA B:1071 , ARG D:28 , THR D:32 , LEU D:33 , ARG D:34 , HIS D:35 , PHE D:64 , ALA D:65 , GLU D:67 , HOH D:2078 , HOH D:2079 , HOH D:2080 , LYS F:6 , COA F:1071 , HOH F:2086
BINDING SITE FOR RESIDUE COA D1071
14
BC5
SOFTWARE
GLN A:57 , ARG B:45 , THR B:47 , GLN B:57 , LYS E:3 , TYR E:5 , ASP E:37 , TRP E:38 , ALA E:65 , FMN E:1070 , HOH E:2080 , HOH E:2081 , HOH E:2083
BINDING SITE FOR RESIDUE FMN E1069
15
BC6
SOFTWARE
ARG A:45 , THR A:47 , GLN A:57 , GLN B:57 , HOH B:2074 , FMN E:1069 , NA E:1072 , HOH E:2084 , HOH E:2085 , LYS F:3 , TYR F:5 , ASP F:37 , TRP F:38 , ALA F:65
BINDING SITE FOR RESIDUE FMN E1070
16
BC7
SOFTWARE
LYS A:6 , LEU A:66 , COA A:1070 , LYS C:6 , VAL C:8 , ALA C:29 , LEU C:33 , LEU C:66 , COA C:1074 , HOH C:2086 , HOH C:2087 , THR E:32 , LEU E:33 , ARG E:34 , HIS E:35 , ALA E:65 , GLU E:67 , HOH E:2086
BINDING SITE FOR RESIDUE COA E1071
17
BC8
SOFTWARE
LYS D:7 , LYS D:42 , HOH D:2049 , GLU F:9 , LYS F:42 , GLU F:43
BINDING SITE FOR RESIDUE PO4 F1070
18
BC9
SOFTWARE
SER A:14 , GLU A:15 , GLU A:16 , HOH A:2014 , LYS B:6 , LEU B:66 , COA B:1071 , LYS D:6 , VAL D:8 , LEU D:66 , COA D:1071 , GLY E:2 , ARG F:28 , THR F:32 , LEU F:33 , ARG F:34 , HIS F:35 , PHE F:64 , ALA F:65 , LEU F:66 , GLU F:67 , HOH F:2085 , HOH F:2086 , HOH F:2087 , HOH F:2088 , HOH F:2089 , HOH F:2090 , HOH F:2092
BINDING SITE FOR RESIDUE COA F1071
19
CC1
SOFTWARE
FMN E:1070 , HOH F:2007 , HOH F:2050
BINDING SITE FOR RESIDUE NA E1072
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2ux9b_ (B:)
1b: SCOP_d2ux9c_ (C:)
1c: SCOP_d2ux9d_ (D:)
1d: SCOP_d2ux9e_ (E:)
1e: SCOP_d2ux9f_ (F:)
2a: SCOP_d2ux9a1 (A:2-67)
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Classes
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Dodecin subunit-like
(56)
Superfamily
:
Dodecin-like
(33)
Family
:
Dodecin-like
(29)
Protein domain
:
automated matches
(24)
Thermus thermophilus HB8 [TaxId: 300852]
(6)
1a
d2ux9b_
B:
1b
d2ux9c_
C:
1c
d2ux9d_
D:
1d
d2ux9e_
E:
1e
d2ux9f_
F:
Protein domain
:
Uncharacterized protein TTHA1431
(3)
Thermus thermophilus [TaxId: 274]
(3)
2a
d2ux9a1
A:2-67
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2ux9B00 (B:2-68)
1b: CATH_2ux9E00 (E:2-68)
1c: CATH_2ux9C00 (C:2-69)
1d: CATH_2ux9D00 (D:2-69)
1e: CATH_2ux9F00 (F:2-69)
1f: CATH_2ux9A00 (A:2-67)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dodecin subunit-like
(24)
Homologous Superfamily
:
Flavin-binding protein dodecin
(24)
Thermus thermophilus. Organism_taxid: 300852. Strain: hb8.
(5)
1a
2ux9B00
B:2-68
1b
2ux9E00
E:2-68
1c
2ux9C00
C:2-69
1d
2ux9D00
D:2-69
1e
2ux9F00
F:2-69
1f
2ux9A00
A:2-67
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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