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2UVO
Biol. Unit 2
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Asym.Unit (232 KB)
Biol.Unit 1 (116 KB)
Biol.Unit 2 (112 KB)
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(1)
Title
:
HIGH RESOLUTION CRYSTAL STRUCTURE OF WHEAT GERM AGGLUTININ IN COMPLEX WITH N-ACETYL-D-GLUCOSAMINE
Authors
:
D. Schwefel, V. Wittmann, K. Diederichs, W. Welte
Date
:
13 Mar 07 (Deposition) - 27 May 08 (Release) - 30 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: E,F (1x)
Keywords
:
Carbohydrate-Binding Protein, Hevein Domain, Chitin-Binding, Wheat Germ Agglutinin, Chitin-Binding Protein, N-Acetyl-D- Glucosamine, Wga, Glcnac, Chitin, Lectin, Antifungal, Protein-Carbohydrate Interaction
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
D. Schwefel, C. Maierhofer, J. G. Beck, S. Seeberger, K. Diederichs, H. M. Moller, W. Welte, V. Wittmann
Structural Basis Of Multivalent Binding To Wheat Germ Agglutinin.
J. Am. Chem. Soc. V. 132 8704 2010
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
3b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
3c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
3d: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGd)
3e: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGe)
3f: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGf)
3g: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGg)
3h: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGh)
3i: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGi)
4a: PYROGLUTAMIC ACID (PCAa)
4b: PYROGLUTAMIC ACID (PCAb)
4c: PYROGLUTAMIC ACID (PCAc)
4d: PYROGLUTAMIC ACID (PCAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
NDG
4
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
4
PCA
2
Mod. Amino Acid
PYROGLUTAMIC ACID
[
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Sites
(10, 10)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC4 (SOFTWARE)
03: BC6 (SOFTWARE)
04: BC7 (SOFTWARE)
05: BC8 (SOFTWARE)
06: BC9 (SOFTWARE)
07: CC1 (SOFTWARE)
08: CC2 (SOFTWARE)
09: CC3 (SOFTWARE)
10: CC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
GLY E:124 , ALA E:125 , CYS E:126 , ASP E:129 , CYS E:153 , HOH E:2122 , MET F:26 , GLY F:27 , TRP F:41
BINDING SITE FOR RESIDUE GOL E1176
02
AC4
SOFTWARE
GLY E:27 , GLY F:124 , ALA F:125 , CYS F:126 , ASP F:129 , CYS F:153 , HOH F:2093 , HOH F:2141 , HOH F:2142
BINDING SITE FOR RESIDUE GOL F1178
03
BC6
SOFTWARE
SER E:62 , TYR E:64 , TYR E:66 , GLU E:72 , TYR E:73 , HOH E:2041 , HOH E:2119 , SER F:114 , GLU F:115
BINDING SITE FOR RESIDUE NDG E1172
04
BC7
SOFTWARE
SER E:62 , TYR E:64 , TYR E:66 , GLU E:72 , TYR E:73 , HOH E:2041 , HOH E:2119 , SER F:114 , GLU F:115
BINDING SITE FOR RESIDUE NAG E1173
05
BC8
SOFTWARE
ASP E:86 , SER E:105 , TRP E:107 , PHE E:109 , GLU E:115 , PHE E:116 , HOH E:2120 , ALA F:71 , GLU F:72
BINDING SITE FOR RESIDUE NDG E1174
06
BC9
SOFTWARE
ASP E:129 , SER E:148 , SER E:152 , GLY E:158 , TYR E:159 , HOH E:2097 , HOH E:2110 , HOH E:2121 , GLY F:28 , ASP F:29
BINDING SITE FOR RESIDUE NDG E1175
07
CC1
SOFTWARE
PRO E:157 , SER F:19 , TYR F:21 , TYR F:23 , ASP F:29 , TYR F:30
BINDING SITE FOR RESIDUE NAG F1174
08
CC2
SOFTWARE
SER E:114 , GLU E:115 , SER F:62 , TYR F:64 , TYR F:66 , GLU F:72 , TYR F:73 , HOH F:2136 , HOH F:2137
BINDING SITE FOR RESIDUE NAG F1175
09
CC3
SOFTWARE
ALA E:71 , GLU E:72 , ASP F:86 , SER F:105 , TRP F:107 , PHE F:109 , GLU F:115 , PHE F:116 , HOH F:2138 , HOH F:2139 , HOH F:2140
BINDING SITE FOR RESIDUE NDG F1176
10
CC4
SOFTWARE
GLY E:28 , ASP E:29 , ASP F:129 , SER F:148 , TRP F:150 , SER F:152 , TYR F:159 , HOH F:2112
BINDING SITE FOR RESIDUE NAG F1177
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 14)
Info
All PROSITE Patterns/Profiles
1: CHIT_BIND_I_2 (E:43-85,E:86-128,E:129-171,F:129-1...)
2: CHIT_BIND_I_1 (E:12-31,E:55-74,E:98-117,E:141-160...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CHIT_BIND_I_2
PS50941
Chitin-binding type-1 domain profile.
AGI1_WHEAT
26-68
69-111
112-154
155-197
6
-
-
-
E:43-85
F:43-85
-
-
E:86-128
F:86-128
-
-
E:129-171
F:129-171
2
CHIT_BIND_I_1
PS00026
Chitin recognition or binding domain signature.
AGI1_WHEAT
38-57
81-100
124-143
167-186
8
-
-
E:12-31
F:12-31
-
-
E:55-74
F:55-74
-
-
E:98-117
F:98-117
-
-
E:141-160
F:141-160
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d2uvoa1 (A:1-52)
1b: SCOP_d2uvoa2 (A:53-86)
1c: SCOP_d2uvoe3 (E:87-129)
1d: SCOP_d2uvoe4 (E:130-171)
1e: SCOP_d2uvof1 (F:1-52)
1f: SCOP_d2uvof2 (F:53-86)
1g: SCOP_d2uvof3 (F:87-129)
1h: SCOP_d2uvof4 (F:130-171)
1i: SCOP_d2uvoa3 (A:87-129)
1j: SCOP_d2uvoa4 (A:130-170)
1k: SCOP_d2uvob1 (B:1-52)
1l: SCOP_d2uvob2 (B:53-86)
1m: SCOP_d2uvob3 (B:87-129)
1n: SCOP_d2uvob4 (B:130-171)
1o: SCOP_d2uvoe1 (E:1-52)
1p: SCOP_d2uvoe2 (E:53-86)
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)
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Folds
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(
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Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
Plant lectins/antimicrobial peptides
(31)
Family
:
Hevein-like agglutinin (lectin) domain
(28)
Protein domain
:
Wheat germ agglutinin (WGA)
(12)
Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]
(12)
1a
d2uvoa1
A:1-52
1b
d2uvoa2
A:53-86
1c
d2uvoe3
E:87-129
1d
d2uvoe4
E:130-171
1e
d2uvof1
F:1-52
1f
d2uvof2
F:53-86
1g
d2uvof3
F:87-129
1h
d2uvof4
F:130-171
1i
d2uvoa3
A:87-129
1j
d2uvoa4
A:130-170
1k
d2uvob1
B:1-52
1l
d2uvob2
B:53-86
1m
d2uvob3
B:87-129
1n
d2uvob4
B:130-171
1o
d2uvoe1
E:1-52
1p
d2uvoe2
E:53-86
[
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CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_2uvoA04 (A:129-170)
1b: CATH_2uvoB04 (B:129-171)
1c: CATH_2uvoE02 (E:43-85)
1d: CATH_2uvoF02 (F:43-85)
1e: CATH_2uvoA03 (A:86-128)
1f: CATH_2uvoB03 (B:86-128)
1g: CATH_2uvoE03 (E:86-128)
1h: CATH_2uvoF03 (F:86-128)
1i: CATH_2uvoE04 (E:129-171)
1j: CATH_2uvoA01 (A:2-42)
1k: CATH_2uvoB01 (B:2-42)
1l: CATH_2uvoE01 (E:2-42)
1m: CATH_2uvoF01 (F:2-42)
1n: CATH_2uvoF04 (F:129-171)
1o: CATH_2uvoA02 (A:43-85)
1p: CATH_2uvoB02 (B:43-85)
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)
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)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Wheat Germ Agglutinin (Isolectin 2); domain 1
(140)
Homologous Superfamily
:
[code=3.30.60.10, no name defined]
(23)
Wheat (Triticum aestivum)
(2)
1a
2uvoA04
A:129-170
1b
2uvoB04
B:129-171
1c
2uvoE02
E:43-85
1d
2uvoF02
F:43-85
1e
2uvoA03
A:86-128
1f
2uvoB03
B:86-128
1g
2uvoE03
E:86-128
1h
2uvoF03
F:86-128
1i
2uvoE04
E:129-171
1j
2uvoA01
A:2-42
1k
2uvoB01
B:2-42
1l
2uvoE01
E:2-42
1m
2uvoF01
F:2-42
1n
2uvoF04
F:129-171
1o
2uvoA02
A:43-85
1p
2uvoB02
B:43-85
[
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Pfam Domains
(1, 16)
Info
all PFAM domains
1a: PFAM_Chitin_bind_1_2uvoF01 (F:129-169)
1b: PFAM_Chitin_bind_1_2uvoF02 (F:129-169)
1c: PFAM_Chitin_bind_1_2uvoF03 (F:129-169)
1d: PFAM_Chitin_bind_1_2uvoF04 (F:129-169)
1e: PFAM_Chitin_bind_1_2uvoF05 (F:129-169)
1f: PFAM_Chitin_bind_1_2uvoF06 (F:129-169)
1g: PFAM_Chitin_bind_1_2uvoF07 (F:129-169)
1h: PFAM_Chitin_bind_1_2uvoF08 (F:129-169)
1i: PFAM_Chitin_bind_1_2uvoF09 (F:129-169)
1j: PFAM_Chitin_bind_1_2uvoF10 (F:129-169)
1k: PFAM_Chitin_bind_1_2uvoF11 (F:129-169)
1l: PFAM_Chitin_bind_1_2uvoF12 (F:129-169)
1m: PFAM_Chitin_bind_1_2uvoF13 (F:129-169)
1n: PFAM_Chitin_bind_1_2uvoF14 (F:129-169)
1o: PFAM_Chitin_bind_1_2uvoF15 (F:129-169)
1p: PFAM_Chitin_bind_1_2uvoF16 (F:129-169)
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Organisms
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)
Clan
:
no clan defined [family: Chitin_bind_1]
(17)
Family
:
Chitin_bind_1
(17)
Triticum aestivum (Wheat)
(8)
1a
Chitin_bind_1-2uvoF01
F:129-169
1b
Chitin_bind_1-2uvoF02
F:129-169
1c
Chitin_bind_1-2uvoF03
F:129-169
1d
Chitin_bind_1-2uvoF04
F:129-169
1e
Chitin_bind_1-2uvoF05
F:129-169
1f
Chitin_bind_1-2uvoF06
F:129-169
1g
Chitin_bind_1-2uvoF07
F:129-169
1h
Chitin_bind_1-2uvoF08
F:129-169
1i
Chitin_bind_1-2uvoF09
F:129-169
1j
Chitin_bind_1-2uvoF10
F:129-169
1k
Chitin_bind_1-2uvoF11
F:129-169
1l
Chitin_bind_1-2uvoF12
F:129-169
1m
Chitin_bind_1-2uvoF13
F:129-169
1n
Chitin_bind_1-2uvoF14
F:129-169
1o
Chitin_bind_1-2uvoF15
F:129-169
1p
Chitin_bind_1-2uvoF16
F:129-169
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