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2UVO
Asym. Unit
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Asym.Unit (232 KB)
Biol.Unit 1 (116 KB)
Biol.Unit 2 (112 KB)
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(1)
Title
:
HIGH RESOLUTION CRYSTAL STRUCTURE OF WHEAT GERM AGGLUTININ IN COMPLEX WITH N-ACETYL-D-GLUCOSAMINE
Authors
:
D. Schwefel, V. Wittmann, K. Diederichs, W. Welte
Date
:
13 Mar 07 (Deposition) - 27 May 08 (Release) - 30 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: E,F (1x)
Keywords
:
Carbohydrate-Binding Protein, Hevein Domain, Chitin-Binding, Wheat Germ Agglutinin, Chitin-Binding Protein, N-Acetyl-D- Glucosamine, Wga, Glcnac, Chitin, Lectin, Antifungal, Protein-Carbohydrate Interaction
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Schwefel, C. Maierhofer, J. G. Beck, S. Seeberger, K. Diederichs, H. M. Moller, W. Welte, V. Wittmann
Structural Basis Of Multivalent Binding To Wheat Germ Agglutinin.
J. Am. Chem. Soc. V. 132 8704 2010
[
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Hetero Components
(4, 26)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
3b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
3c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
3d: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGd)
3e: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGe)
3f: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGf)
3g: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGg)
3h: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGh)
3i: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGi)
4a: PYROGLUTAMIC ACID (PCAa)
4b: PYROGLUTAMIC ACID (PCAb)
4c: PYROGLUTAMIC ACID (PCAc)
4d: PYROGLUTAMIC ACID (PCAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
NAG
9
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
NDG
9
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
4
PCA
4
Mod. Amino Acid
PYROGLUTAMIC ACID
[
close Hetero Component info
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:124 , ALA A:125 , CYS A:126 , ASP A:129 , CYS A:153 , HOH A:2135 , HOH A:2181 , HOH A:2182 , MET B:26 , GLY B:27 , TRP B:41
BINDING SITE FOR RESIDUE GOL A1177
02
AC2
SOFTWARE
MET A:26 , GLY A:27 , ALA B:125 , CYS B:126 , TYR B:145 , CYS B:153 , HOH B:2137 , HOH B:2176 , HOH B:2177
BINDING SITE FOR RESIDUE GOL B1179
03
AC3
SOFTWARE
GLY E:124 , ALA E:125 , CYS E:126 , ASP E:129 , CYS E:153 , HOH E:2122 , MET F:26 , GLY F:27 , TRP F:41
BINDING SITE FOR RESIDUE GOL E1176
04
AC4
SOFTWARE
GLY E:27 , GLY F:124 , ALA F:125 , CYS F:126 , ASP F:129 , CYS F:153 , HOH F:2093 , HOH F:2141 , HOH F:2142
BINDING SITE FOR RESIDUE GOL F1178
05
AC5
SOFTWARE
SER A:62 , TYR A:66 , GLU A:72 , TYR A:73 , HOH A:2056 , SER B:114 , GLU B:115
BINDING SITE FOR RESIDUE NDG A1173
06
AC6
SOFTWARE
SER A:62 , TYR A:64 , TYR A:66 , GLU A:72 , TYR A:73 , HOH A:2056 , SER B:114 , GLU B:115
BINDING SITE FOR RESIDUE NAG A1174
07
AC7
SOFTWARE
ASP A:86 , SER A:105 , TRP A:107 , PHE A:109 , GLU A:115 , PHE A:116 , HOH A:2176 , HOH A:2177 , HOH A:2179 , ALA B:71 , GLU B:72
BINDING SITE FOR RESIDUE NDG A1175
08
AC8
SOFTWARE
ASP A:129 , SER A:148 , SER A:152 , GLY A:158 , TYR A:159 , HOH A:2163 , HOH A:2180 , GLY B:28 , ASP B:29
BINDING SITE FOR RESIDUE NAG A1176
09
AC9
SOFTWARE
SER B:19 , TYR B:21 , TYR B:23 , ASP B:29 , TYR B:30
BINDING SITE FOR RESIDUE NAG B1173
10
BC1
SOFTWARE
SER A:114 , GLU A:115 , SER B:62 , TYR B:64 , TYR B:66 , GLU B:72 , TYR B:73 , HOH B:2172 , HOH B:2173
BINDING SITE FOR RESIDUE NDG B1174
11
BC2
SOFTWARE
SER A:114 , GLU A:115 , SER B:62 , TYR B:64 , TYR B:66 , GLU B:72 , TYR B:73 , HOH B:2172 , HOH B:2173
BINDING SITE FOR RESIDUE NAG B1175
12
BC3
SOFTWARE
ALA A:71 , GLU A:72 , ASP B:86 , SER B:105 , TRP B:107 , PHE B:109 , GLU B:115 , PHE B:116 , HOH B:2097 , HOH B:2174
BINDING SITE FOR RESIDUE NDG B1176
13
BC4
SOFTWARE
GLY A:28 , ASP A:29 , ASP B:129 , SER B:148 , SER B:152 , TYR B:159 , HOH B:2151 , HOH B:2175
BINDING SITE FOR RESIDUE NDG B1177
14
BC5
SOFTWARE
GLY A:28 , ASP A:29 , ASP B:129 , SER B:148 , SER B:152 , TYR B:159 , HOH B:2151 , HOH B:2175
BINDING SITE FOR RESIDUE NAG B1178
15
BC6
SOFTWARE
SER E:62 , TYR E:64 , TYR E:66 , GLU E:72 , TYR E:73 , HOH E:2041 , HOH E:2119 , SER F:114 , GLU F:115
BINDING SITE FOR RESIDUE NDG E1172
16
BC7
SOFTWARE
SER E:62 , TYR E:64 , TYR E:66 , GLU E:72 , TYR E:73 , HOH E:2041 , HOH E:2119 , SER F:114 , GLU F:115
BINDING SITE FOR RESIDUE NAG E1173
17
BC8
SOFTWARE
ASP E:86 , SER E:105 , TRP E:107 , PHE E:109 , GLU E:115 , PHE E:116 , HOH E:2120 , ALA F:71 , GLU F:72
BINDING SITE FOR RESIDUE NDG E1174
18
BC9
SOFTWARE
ASP E:129 , SER E:148 , SER E:152 , GLY E:158 , TYR E:159 , HOH E:2097 , HOH E:2110 , HOH E:2121 , GLY F:28 , ASP F:29
BINDING SITE FOR RESIDUE NDG E1175
19
CC1
SOFTWARE
PRO E:157 , SER F:19 , TYR F:21 , TYR F:23 , ASP F:29 , TYR F:30
BINDING SITE FOR RESIDUE NAG F1174
20
CC2
SOFTWARE
SER E:114 , GLU E:115 , SER F:62 , TYR F:64 , TYR F:66 , GLU F:72 , TYR F:73 , HOH F:2136 , HOH F:2137
BINDING SITE FOR RESIDUE NAG F1175
21
CC3
SOFTWARE
ALA E:71 , GLU E:72 , ASP F:86 , SER F:105 , TRP F:107 , PHE F:109 , GLU F:115 , PHE F:116 , HOH F:2138 , HOH F:2139 , HOH F:2140
BINDING SITE FOR RESIDUE NDG F1176
22
CC4
SOFTWARE
GLY E:28 , ASP E:29 , ASP F:129 , SER F:148 , TRP F:150 , SER F:152 , TYR F:159 , HOH F:2112
BINDING SITE FOR RESIDUE NAG F1177
[
close Site info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 28)
Info
All PROSITE Patterns/Profiles
1: CHIT_BIND_I_2 (-|A:43-85,B:43-85,E:43-85,F:43-85|...)
2: CHIT_BIND_I_1 (A:12-31,B:12-31,E:12-31,F:12-31|A:...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CHIT_BIND_I_2
PS50941
Chitin-binding type-1 domain profile.
AGI1_WHEAT
26-68
69-111
112-154
155-197
12
-
A:43-85
B:43-85
E:43-85
F:43-85
A:86-128
B:86-128
E:86-128
F:86-128
A:129-170
B:129-171
E:129-171
F:129-171
2
CHIT_BIND_I_1
PS00026
Chitin recognition or binding domain signature.
AGI1_WHEAT
38-57
81-100
124-143
167-186
16
A:12-31
B:12-31
E:12-31
F:12-31
A:55-74
B:55-74
E:55-74
F:55-74
A:98-117
B:98-117
E:98-117
F:98-117
A:141-160
B:141-160
E:141-160
F:141-160
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d2uvoa1 (A:1-52)
1b: SCOP_d2uvoa2 (A:53-86)
1c: SCOP_d2uvoe3 (E:87-129)
1d: SCOP_d2uvoe4 (E:130-171)
1e: SCOP_d2uvof1 (F:1-52)
1f: SCOP_d2uvof2 (F:53-86)
1g: SCOP_d2uvof3 (F:87-129)
1h: SCOP_d2uvof4 (F:130-171)
1i: SCOP_d2uvoa3 (A:87-129)
1j: SCOP_d2uvoa4 (A:130-170)
1k: SCOP_d2uvob1 (B:1-52)
1l: SCOP_d2uvob2 (B:53-86)
1m: SCOP_d2uvob3 (B:87-129)
1n: SCOP_d2uvob4 (B:130-171)
1o: SCOP_d2uvoe1 (E:1-52)
1p: SCOP_d2uvoe2 (E:53-86)
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Folds
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
Plant lectins/antimicrobial peptides
(31)
Family
:
Hevein-like agglutinin (lectin) domain
(28)
Protein domain
:
Wheat germ agglutinin (WGA)
(12)
Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]
(12)
1a
d2uvoa1
A:1-52
1b
d2uvoa2
A:53-86
1c
d2uvoe3
E:87-129
1d
d2uvoe4
E:130-171
1e
d2uvof1
F:1-52
1f
d2uvof2
F:53-86
1g
d2uvof3
F:87-129
1h
d2uvof4
F:130-171
1i
d2uvoa3
A:87-129
1j
d2uvoa4
A:130-170
1k
d2uvob1
B:1-52
1l
d2uvob2
B:53-86
1m
d2uvob3
B:87-129
1n
d2uvob4
B:130-171
1o
d2uvoe1
E:1-52
1p
d2uvoe2
E:53-86
[
close SCOP info
]
CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_2uvoA04 (A:129-170)
1b: CATH_2uvoB04 (B:129-171)
1c: CATH_2uvoE02 (E:43-85)
1d: CATH_2uvoF02 (F:43-85)
1e: CATH_2uvoA03 (A:86-128)
1f: CATH_2uvoB03 (B:86-128)
1g: CATH_2uvoE03 (E:86-128)
1h: CATH_2uvoF03 (F:86-128)
1i: CATH_2uvoE04 (E:129-171)
1j: CATH_2uvoA01 (A:2-42)
1k: CATH_2uvoB01 (B:2-42)
1l: CATH_2uvoE01 (E:2-42)
1m: CATH_2uvoF01 (F:2-42)
1n: CATH_2uvoF04 (F:129-171)
1o: CATH_2uvoA02 (A:43-85)
1p: CATH_2uvoB02 (B:43-85)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Wheat Germ Agglutinin (Isolectin 2); domain 1
(140)
Homologous Superfamily
:
[code=3.30.60.10, no name defined]
(23)
Wheat (Triticum aestivum)
(2)
1a
2uvoA04
A:129-170
1b
2uvoB04
B:129-171
1c
2uvoE02
E:43-85
1d
2uvoF02
F:43-85
1e
2uvoA03
A:86-128
1f
2uvoB03
B:86-128
1g
2uvoE03
E:86-128
1h
2uvoF03
F:86-128
1i
2uvoE04
E:129-171
1j
2uvoA01
A:2-42
1k
2uvoB01
B:2-42
1l
2uvoE01
E:2-42
1m
2uvoF01
F:2-42
1n
2uvoF04
F:129-171
1o
2uvoA02
A:43-85
1p
2uvoB02
B:43-85
[
close CATH info
]
Pfam Domains
(1, 16)
Info
all PFAM domains
1a: PFAM_Chitin_bind_1_2uvoF01 (F:129-169)
1b: PFAM_Chitin_bind_1_2uvoF02 (F:129-169)
1c: PFAM_Chitin_bind_1_2uvoF03 (F:129-169)
1d: PFAM_Chitin_bind_1_2uvoF04 (F:129-169)
1e: PFAM_Chitin_bind_1_2uvoF05 (F:129-169)
1f: PFAM_Chitin_bind_1_2uvoF06 (F:129-169)
1g: PFAM_Chitin_bind_1_2uvoF07 (F:129-169)
1h: PFAM_Chitin_bind_1_2uvoF08 (F:129-169)
1i: PFAM_Chitin_bind_1_2uvoF09 (F:129-169)
1j: PFAM_Chitin_bind_1_2uvoF10 (F:129-169)
1k: PFAM_Chitin_bind_1_2uvoF11 (F:129-169)
1l: PFAM_Chitin_bind_1_2uvoF12 (F:129-169)
1m: PFAM_Chitin_bind_1_2uvoF13 (F:129-169)
1n: PFAM_Chitin_bind_1_2uvoF14 (F:129-169)
1o: PFAM_Chitin_bind_1_2uvoF15 (F:129-169)
1p: PFAM_Chitin_bind_1_2uvoF16 (F:129-169)
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Clan
:
no clan defined [family: Chitin_bind_1]
(17)
Family
:
Chitin_bind_1
(17)
Triticum aestivum (Wheat)
(8)
1a
Chitin_bind_1-2uvoF01
F:129-169
1b
Chitin_bind_1-2uvoF02
F:129-169
1c
Chitin_bind_1-2uvoF03
F:129-169
1d
Chitin_bind_1-2uvoF04
F:129-169
1e
Chitin_bind_1-2uvoF05
F:129-169
1f
Chitin_bind_1-2uvoF06
F:129-169
1g
Chitin_bind_1-2uvoF07
F:129-169
1h
Chitin_bind_1-2uvoF08
F:129-169
1i
Chitin_bind_1-2uvoF09
F:129-169
1j
Chitin_bind_1-2uvoF10
F:129-169
1k
Chitin_bind_1-2uvoF11
F:129-169
1l
Chitin_bind_1-2uvoF12
F:129-169
1m
Chitin_bind_1-2uvoF13
F:129-169
1n
Chitin_bind_1-2uvoF14
F:129-169
1o
Chitin_bind_1-2uvoF15
F:129-169
1p
Chitin_bind_1-2uvoF16
F:129-169
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