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2UVF
Biol. Unit 2
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Asym.Unit (202 KB)
Biol.Unit 1 (99 KB)
Biol.Unit 2 (100 KB)
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(1)
Title
:
STRUCTURE OF YERSINIA ENTEROCOLITICA FAMILY 28 EXOPOLYGALACTURONASE IN COMPLEX WITH DIGALATURONIC ACID
Authors
:
D. W. Abbott, A. B. Boraston
Date
:
09 Mar 07 (Deposition) - 08 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Gh28, Pectin, Cell Wall, Hydrolase, Periplasm, Yersinia Enterocolitica, Beta-Helix, Glycosidase, Exo-Activity
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. W. Abbott, A. B. Boraston
The Structural Basis For Exopolygalacturonase Activity In A Family 28 Glycoside Hydrolase.
J. Mol. Biol. V. 368 1215 2007
[
close entry info
]
Hetero Components
(3, 18)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: DIGALACTURONIC ACID (AD0a)
3a: NICKEL (II) ION (NIa)
3b: NICKEL (II) ION (NIb)
3c: NICKEL (II) ION (NIc)
3d: NICKEL (II) ION (NId)
3e: NICKEL (II) ION (NIe)
3f: NICKEL (II) ION (NIf)
3g: NICKEL (II) ION (NIg)
3h: NICKEL (II) ION (NIh)
3i: NICKEL (II) ION (NIi)
3j: NICKEL (II) ION (NIj)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
5k: SULFATE ION (SO4k)
5l: SULFATE ION (SO4l)
5m: SULFATE ION (SO4m)
5n: SULFATE ION (SO4n)
5o: SULFATE ION (SO4o)
5p: SULFATE ION (SO4p)
5q: SULFATE ION (SO4q)
5r: SULFATE ION (SO4r)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
AD0
-1
Ligand/Ion
DIGALACTURONIC ACID
3
NI
-1
Ligand/Ion
NICKEL (II) ION
4
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
SO4
12
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC7 (SOFTWARE)
02: BC2 (SOFTWARE)
03: BC3 (SOFTWARE)
04: BC4 (SOFTWARE)
05: BC5 (SOFTWARE)
06: BC6 (SOFTWARE)
07: BC7 (SOFTWARE)
08: BC8 (SOFTWARE)
09: BC9 (SOFTWARE)
10: CC1 (SOFTWARE)
11: CC2 (SOFTWARE)
12: CC3 (SOFTWARE)
13: CC4 (SOFTWARE)
14: CC5 (SOFTWARE)
15: CC6 (SOFTWARE)
16: CC7 (SOFTWARE)
17: CC8 (SOFTWARE)
18: CC9 (SOFTWARE)
19: DC1 (SOFTWARE)
20: DC2 (SOFTWARE)
21: DC3 (SOFTWARE)
22: DC4 (SOFTWARE)
23: DC5 (SOFTWARE)
24: DC7 (SOFTWARE)
25: DC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC7
SOFTWARE
HIS A:97 , HOH A:2025 , HOH A:2086 , HIS B:97 , HOH B:2157
BINDING SITE FOR RESIDUE NI A1613
02
BC2
SOFTWARE
ASP B:402 , HIS B:435 , HOH B:2293 , HOH B:2294
BINDING SITE FOR RESIDUE SO4 B1608
03
BC3
SOFTWARE
ARG B:488 , ASP B:530 , ASN B:531
BINDING SITE FOR RESIDUE SO4 B1609
04
BC4
SOFTWARE
TYR B:230 , ARG B:231 , PRO B:250 , ARG B:337 , HOH B:2295
BINDING SITE FOR RESIDUE SO4 B1610
05
BC5
SOFTWARE
LYS B:492
BINDING SITE FOR RESIDUE SO4 B1611
06
BC6
SOFTWARE
ALA B:424 , ASP B:450 , ILE B:451 , LEU B:452 , PEG B:1630
BINDING SITE FOR RESIDUE SO4 B1612
07
BC7
SOFTWARE
ASP B:249 , PRO B:250 , ASN B:251
BINDING SITE FOR RESIDUE SO4 B1613
08
BC8
SOFTWARE
GLU B:123 , THR B:124 , SER B:125 , LYS B:149
BINDING SITE FOR RESIDUE SO4 B1614
09
BC9
SOFTWARE
GLN B:39 , GLN B:40 , LYS B:144 , HOH B:2002
BINDING SITE FOR RESIDUE SO4 B1615
10
CC1
SOFTWARE
THR B:583 , GLU B:584 , HOH B:2297
BINDING SITE FOR RESIDUE SO4 B1616
11
CC2
SOFTWARE
PRO B:566 , GLY B:587 , ASP B:588 , THR B:589 , HIS B:592 , HOH B:2298
BINDING SITE FOR RESIDUE SO4 B1617
12
CC3
SOFTWARE
LYS B:58 , ARG B:483 , PEG B:1630
BINDING SITE FOR RESIDUE SO4 B1618
13
CC4
SOFTWARE
ALA B:47 , TYR B:48 , ASP B:49 , SER B:52 , VAL B:54 , TYR B:343 , HOH B:2299
BINDING SITE FOR RESIDUE SO4 B1619
14
CC5
SOFTWARE
ASP B:376 , GLY B:401 , HIS B:435 , HOH B:2218 , HOH B:2219
BINDING SITE FOR RESIDUE NI B1620
15
CC6
SOFTWARE
PRO B:255 , HIS B:363 , GLN B:389 , GLU B:419
BINDING SITE FOR RESIDUE NI B1621
16
CC7
SOFTWARE
HIS B:302 , GLU B:303
BINDING SITE FOR RESIDUE NI B1622
17
CC8
SOFTWARE
ASP B:270
BINDING SITE FOR RESIDUE NI B1623
18
CC9
SOFTWARE
ASP B:49 , ARG B:262
BINDING SITE FOR RESIDUE NI B1624
19
DC1
SOFTWARE
ASP B:83
BINDING SITE FOR RESIDUE NI B1625
20
DC2
SOFTWARE
HIS B:443 , ILE B:508 , TYR B:510
BINDING SITE FOR RESIDUE ACT B1626
21
DC3
SOFTWARE
ASP B:96 , TYR B:99 , ILE B:110 , HOH B:2300
BINDING SITE FOR RESIDUE ACT B1627
22
DC4
SOFTWARE
ASN B:406 , GLY B:441 , HOH B:2301
BINDING SITE FOR RESIDUE ACT B1628
23
DC5
SOFTWARE
HIS B:97 , TYR B:430 , TYR B:459 , HOH B:2302
BINDING SITE FOR RESIDUE ACT B1629
24
DC7
SOFTWARE
ILE B:451 , LEU B:452 , ASN B:479 , THR B:481 , ARG B:483 , SO4 B:1612 , SO4 B:1618 , HOH B:2303
BINDING SITE FOR RESIDUE PEG B1630
25
DC8
SOFTWARE
TRP B:550 , ARG B:573 , LYS B:597
BINDING SITE FOR RESIDUE PEG B1631
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_fn3_2uvfB01 (B:36-143)
1b: PFAM_fn3_2uvfB02 (B:36-143)
2a: PFAM_Glyco_hydro_28_2uvfB03 (B:254-518)
2b: PFAM_Glyco_hydro_28_2uvfB04 (B:254-518)
3a: PFAM_Pectate_lyase_3_2uvfB05 (B:156-328)
3b: PFAM_Pectate_lyase_3_2uvfB06 (B:156-328)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
E-set
(290)
Family
:
fn3
(66)
Yersinia enterocolitica
(1)
1a
fn3-2uvfB01
B:36-143
1b
fn3-2uvfB02
B:36-143
Clan
:
Pec_lyase
(42)
Family
:
Glyco_hydro_28
(6)
Yersinia enterocolitica
(1)
2a
Glyco_hydro_28-2uvfB03
B:254-518
2b
Glyco_hydro_28-2uvfB04
B:254-518
Family
:
Pectate_lyase_3
(5)
Yersinia enterocolitica
(1)
3a
Pectate_lyase_3-2uvfB05
B:156-328
3b
Pectate_lyase_3-2uvfB06
B:156-328
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Chain B
Asymmetric Unit 1
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