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2UVF
Biol. Unit 1
Info
Asym.Unit (202 KB)
Biol.Unit 1 (99 KB)
Biol.Unit 2 (100 KB)
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(1)
Title
:
STRUCTURE OF YERSINIA ENTEROCOLITICA FAMILY 28 EXOPOLYGALACTURONASE IN COMPLEX WITH DIGALATURONIC ACID
Authors
:
D. W. Abbott, A. B. Boraston
Date
:
09 Mar 07 (Deposition) - 08 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Gh28, Pectin, Cell Wall, Hydrolase, Periplasm, Yersinia Enterocolitica, Beta-Helix, Glycosidase, Exo-Activity
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
D. W. Abbott, A. B. Boraston
The Structural Basis For Exopolygalacturonase Activity In A Family 28 Glycoside Hydrolase.
J. Mol. Biol. V. 368 1215 2007
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: DIGALACTURONIC ACID (AD0a)
3a: NICKEL (II) ION (NIa)
3b: NICKEL (II) ION (NIb)
3c: NICKEL (II) ION (NIc)
3d: NICKEL (II) ION (NId)
3e: NICKEL (II) ION (NIe)
3f: NICKEL (II) ION (NIf)
3g: NICKEL (II) ION (NIg)
3h: NICKEL (II) ION (NIh)
3i: NICKEL (II) ION (NIi)
3j: NICKEL (II) ION (NIj)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
5k: SULFATE ION (SO4k)
5l: SULFATE ION (SO4l)
5m: SULFATE ION (SO4m)
5n: SULFATE ION (SO4n)
5o: SULFATE ION (SO4o)
5p: SULFATE ION (SO4p)
5q: SULFATE ION (SO4q)
5r: SULFATE ION (SO4r)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
-1
Ligand/Ion
ACETATE ION
2
AD0
1
Ligand/Ion
DIGALACTURONIC ACID
3
NI
-1
Ligand/Ion
NICKEL (II) ION
4
PEG
-1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
SO4
6
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: DC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:231 , PRO A:250 , ASN A:251 , ARG A:337
BINDING SITE FOR RESIDUE SO4 A1607
02
AC2
SOFTWARE
ARG A:488 , ASP A:530 , ASN A:531
BINDING SITE FOR RESIDUE SO4 A1608
03
AC3
SOFTWARE
GLY A:587 , ASP A:588 , THR A:589 , HIS A:592
BINDING SITE FOR RESIDUE SO4 A1609
04
AC4
SOFTWARE
TYR A:94 , ARG A:288 , ILE A:371 , GLN A:373 , PHE A:397
BINDING SITE FOR RESIDUE SO4 A1610
05
AC5
SOFTWARE
ASN A:87 , PHE A:88 , SER A:89 , PRO A:90 , HOH A:2021
BINDING SITE FOR RESIDUE SO4 A1611
06
AC6
SOFTWARE
ASN A:378 , ASN A:379 , AD0 A:1617
BINDING SITE FOR RESIDUE SO4 A1612
07
AC7
SOFTWARE
HIS A:97 , HOH A:2025 , HOH A:2086 , HIS B:97 , HOH B:2157
BINDING SITE FOR RESIDUE NI A1613
08
AC8
SOFTWARE
ASP A:376 , GLY A:401 , HIS A:435 , HOH A:2125 , HOH A:2134 , HOH A:2135
BINDING SITE FOR RESIDUE NI A1614
09
AC9
SOFTWARE
ASP A:270 , ARG A:276
BINDING SITE FOR RESIDUE NI A1615
10
BC1
SOFTWARE
HIS A:435 , AD0 A:1617
BINDING SITE FOR RESIDUE NI A1616
11
DC6
SOFTWARE
LEU A:232 , ARG A:240 , HIS A:355 , ASN A:379 , ASP A:381 , GLU A:384 , ASP A:402 , ASN A:406 , GLY A:441 , SER A:442 , HIS A:443 , LYS A:468 , SO4 A:1612 , NI A:1616 , HOH A:2182 , HOH A:2183 , HOH A:2184
BINDING SITE FOR RESIDUE AD0 A1617
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_fn3_2uvfB01 (B:36-143)
1b: PFAM_fn3_2uvfB02 (B:36-143)
2a: PFAM_Glyco_hydro_28_2uvfB03 (B:254-518)
2b: PFAM_Glyco_hydro_28_2uvfB04 (B:254-518)
3a: PFAM_Pectate_lyase_3_2uvfB05 (B:156-328)
3b: PFAM_Pectate_lyase_3_2uvfB06 (B:156-328)
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Clans
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)
Clan
:
E-set
(290)
Family
:
fn3
(66)
Yersinia enterocolitica
(1)
1a
fn3-2uvfB01
B:36-143
1b
fn3-2uvfB02
B:36-143
Clan
:
Pec_lyase
(42)
Family
:
Glyco_hydro_28
(6)
Yersinia enterocolitica
(1)
2a
Glyco_hydro_28-2uvfB03
B:254-518
2b
Glyco_hydro_28-2uvfB04
B:254-518
Family
:
Pectate_lyase_3
(5)
Yersinia enterocolitica
(1)
3a
Pectate_lyase_3-2uvfB05
B:156-328
3b
Pectate_lyase_3-2uvfB06
B:156-328
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Chain A
Asymmetric Unit 1
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Asym.Unit (202 KB)
Header - Asym.Unit
Biol.Unit 1 (99 KB)
Header - Biol.Unit 1
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