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Getting 'Exon' information from database.
2UVE
Asym. Unit
Info
Asym.Unit (200 KB)
Biol.Unit 1 (98 KB)
Biol.Unit 2 (99 KB)
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(1)
Title
:
STRUCTURE OF YERSINIA ENTEROCOLITICA FAMILY 28 EXOPOLYGALACTURONASE
Authors
:
D. W. Abbott, A. B. Boraston
Date
:
09 Mar 07 (Deposition) - 08 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.19
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Gh28, Pectin, Cell Wall, Hydrolase, Periplasm, Yersinia Enterocolitica, Beta-Helix, Glycosidase, Exo-Activity
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. W. Abbott, A. B. Boraston
The Structural Basis For Exopolygalacturonase Activity In A Family 28 Glycoside Hydrolase.
J. Mol. Biol. V. 368 1215 2007
[
close entry info
]
Hetero Components
(3, 29)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: NICKEL (II) ION (NIa)
2b: NICKEL (II) ION (NIb)
2c: NICKEL (II) ION (NIc)
2d: NICKEL (II) ION (NId)
2e: NICKEL (II) ION (NIe)
2f: NICKEL (II) ION (NIf)
2g: NICKEL (II) ION (NIg)
2h: NICKEL (II) ION (NIh)
2i: NICKEL (II) ION (NIi)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
NI
9
Ligand/Ion
NICKEL (II) ION
3
SO4
19
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:376 , GLY A:401 , HIS A:435 , HOH A:2118 , HOH A:2126 , HOH A:2127
BINDING SITE FOR RESIDUE NI A1607
02
AC2
SOFTWARE
ASP A:270 , ARG A:276
BINDING SITE FOR RESIDUE NI A1608
03
AC3
SOFTWARE
ASP A:83
BINDING SITE FOR RESIDUE NI A1609
04
AC4
SOFTWARE
HOH A:2039 , HOH A:2129
BINDING SITE FOR RESIDUE NI A1610
05
AC5
SOFTWARE
TYR A:230 , ARG A:231 , GLU A:239 , PRO A:250 , ARG A:337
BINDING SITE FOR RESIDUE SO4 A1611
06
AC6
SOFTWARE
LYS A:58 , ARG A:483
BINDING SITE FOR RESIDUE SO4 A1612
07
AC7
SOFTWARE
ASN A:378 , ASN A:379 , HOH A:2172 , HOH A:2173
BINDING SITE FOR RESIDUE SO4 A1613
08
AC8
SOFTWARE
PRO A:566 , GLY A:587 , ASP A:588 , THR A:589 , HIS A:592
BINDING SITE FOR RESIDUE SO4 A1614
09
AC9
SOFTWARE
TYR A:94 , ARG A:288 , ILE A:371 , GLN A:373 , PHE A:397
BINDING SITE FOR RESIDUE SO4 A1615
10
BC1
SOFTWARE
SER A:575 , GLU A:576 , ASN A:598 , VAL A:599 , LYS A:600
BINDING SITE FOR RESIDUE SO4 A1616
11
BC2
SOFTWARE
PHE A:88 , SER A:89 , PRO A:90 , HOH A:2174
BINDING SITE FOR RESIDUE SO4 A1617
12
BC3
SOFTWARE
ASP A:167 , GLY A:168 , LYS A:169
BINDING SITE FOR RESIDUE SO4 A1618
13
BC4
SOFTWARE
ARG A:240 , PHE A:354 , HIS A:355 , HOH A:2175 , HOH A:2176
BINDING SITE FOR RESIDUE SO4 A1619
14
BC5
SOFTWARE
ALA A:47 , TYR A:48 , ASP A:49 , SER A:52 , ARG A:262 , TYR A:343 , HOH A:2177
BINDING SITE FOR RESIDUE SO4 A1620
15
BC6
SOFTWARE
SER A:442 , LYS A:468
BINDING SITE FOR RESIDUE SO4 A1621
16
BC7
SOFTWARE
HIS A:97 , HOH A:2023 , HOH A:2077 , HIS B:97 , HOH B:2049 , HOH B:2155
BINDING SITE FOR RESIDUE NI B1607
17
BC8
SOFTWARE
ASP B:376 , GLY B:401 , HIS B:435 , HOH B:2200 , HOH B:2213 , HOH B:2214
BINDING SITE FOR RESIDUE NI B1608
18
BC9
SOFTWARE
ASP B:270
BINDING SITE FOR RESIDUE NI B1609
19
CC1
SOFTWARE
HIS B:363 , GLN B:389 , GLU B:419
BINDING SITE FOR RESIDUE NI B1610
20
CC2
SOFTWARE
HIS B:302 , GLU B:303
BINDING SITE FOR RESIDUE NI B1611
21
CC3
SOFTWARE
TYR B:230 , ARG B:231 , GLU B:239 , PRO B:250 , ARG B:337
BINDING SITE FOR RESIDUE SO4 B1612
22
CC4
SOFTWARE
LYS B:58 , ARG B:483 , HOH B:2282 , HOH B:2283
BINDING SITE FOR RESIDUE SO4 B1613
23
CC5
SOFTWARE
PRO B:566 , GLY B:587 , ASP B:588 , THR B:589 , HIS B:592
BINDING SITE FOR RESIDUE SO4 B1614
24
CC6
SOFTWARE
ASN B:87 , PHE B:88 , SER B:89 , PRO B:90
BINDING SITE FOR RESIDUE SO4 B1615
25
CC7
SOFTWARE
GLN B:40 , GLN B:42
BINDING SITE FOR RESIDUE SO4 B1616
26
CC8
SOFTWARE
ARG B:488 , ASP B:530 , ASN B:531 , HOH B:2284
BINDING SITE FOR RESIDUE SO4 B1617
27
CC9
SOFTWARE
ASN B:378 , ASN B:379 , SO4 B:1619
BINDING SITE FOR RESIDUE SO4 B1618
28
DC1
SOFTWARE
ASP B:402 , HIS B:435 , LYS B:468 , SO4 B:1618 , HOH B:2285
BINDING SITE FOR RESIDUE SO4 B1619
29
DC2
SOFTWARE
HIS B:97 , TYR B:430 , TYR B:459 , ARG B:488 , HOH B:2046 , HOH B:2048
BINDING SITE FOR RESIDUE ACT B1620
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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View:
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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