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2UV3
Asym. Unit
Info
Asym.Unit (53 KB)
Biol.Unit 1 (48 KB)
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(1)
Title
:
STRUCTURE OF THE SIGNAL-REGULATORY PROTEIN (SIRP) ALPHA DOMAIN THAT BINDS CD47.
Authors
:
D. Hatherley, K. Harlos, D. C. Dunlop, D. I. Stuart, A. N. Barclay
Date
:
08 Mar 07 (Deposition) - 27 Mar 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cd47-Binding Domain Of Sirp-Alpha, Receptor, Membrane, Sh3- Binding, Glycoprotein, Transmembrane, Phosphorylation, Human Sirp-Alpha N Terminal V Domain, Immunoglobulin Domain, Signal-Regulatory Protein Alpha
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Hatherley, K. Harlos, D. C. Dunlop, D. I. Stuart, A. N. Barclay
The Structure Of The Macrophage Signal Regulatory Protein Alpha (Sirpalpha) Inhibitory Receptor Reveals A Binding Face Reminiscent Of That Used By T Cell Receptors.
J. Biol. Chem. V. 282 14567 2007
[
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
1b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MES
2
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2
SO4
6
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:29 , LEU A:30 , ILE A:31 , ASP B:10 , HIS B:24 , HOH B:2032 , HOH B:2144 , HOH B:2145
BINDING SITE FOR RESIDUE MES B1124
2
AC2
SOFTWARE
ASP A:10 , VAL A:13 , HIS A:24 , HOH A:2033 , HOH A:2145 , HOH A:2146 , HOH A:2147 , SER B:29 , LEU B:30
BINDING SITE FOR RESIDUE MES A1122
3
AC3
SOFTWARE
SER A:66 , THR A:67 , ASN B:80 , THR B:82 , HOH B:2097 , HOH B:2098
BINDING SITE FOR RESIDUE SO4 A1123
4
AC4
SOFTWARE
ARG A:69 , HOH A:2095 , HOH A:2149 , HOH A:2150
BINDING SITE FOR RESIDUE SO4 A1124
5
AC5
SOFTWARE
PRO B:9 , ASP B:10 , LYS B:11 , SER B:12
BINDING SITE FOR RESIDUE SO4 B1125
6
AC6
SOFTWARE
ARG A:69 , HOH A:2151 , HOH A:2152
BINDING SITE FOR RESIDUE SO4 A1125
7
AC7
SOFTWARE
PRO A:9 , ASP A:10 , LYS A:11 , SER A:12 , HOH A:2012 , GLU B:2
BINDING SITE FOR RESIDUE SO4 A1126
8
AC8
SOFTWARE
ARG A:59 , SER A:79 , ASN A:80 , HOH A:2103
BINDING SITE FOR RESIDUE SO4 A1127
[
close Site info
]
SAPs(SNPs)/Variants
(20, 40)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_015464 (D10E, chain A/B, )
02: VAR_015465 (S14S, chain A/B, )
03: VAR_015466 (S20S, chain A/B, )
04: VAR_015468 (I22I, chain A/B, )
05: VAR_015470 (H24H, chain A/B, )
06: VAR_015471 (V27V, chain A/B, )
07: VAR_015472 (I31N, chain A/B, )
08: VAR_015473 (W38R, chain A/B, )
09: VAR_015474 (A45A, chain A/B, )
10: VAR_015475 (E47K, chain A/B, )
11: VAR_015477 (N51H, chain A/B, )
12: VAR_015478 (E65E, chain A/B, )
13: VAR_015479 (S66S, chain A/B, )
14: VAR_015480 (E70E, chain A/B, )
15: VAR_015483 (S77S, chain A/B, )
16: VAR_015484 (S79S, chain A/B, )
17: VAR_015485 (R95Q, chain A/B, )
18: VAR_015486 (T101T, chain A/B, )
19: VAR_015487 (F103L, chain A/B, )
20: VAR_015488 (H121D, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_015464
D
40
E
SHPS1_HUMAN
Polymorphism
---
A/B
D
10
E
02
UniProt
VAR_015465
L
44
S
SHPS1_HUMAN
Polymorphism
1135193
A/B
S
14
S
03
UniProt
VAR_015466
T
50
S
SHPS1_HUMAN
Polymorphism
17855609
A/B
S
20
S
04
UniProt
VAR_015468
T
52
I
SHPS1_HUMAN
Polymorphism
17855610
A/B
I
22
I
05
UniProt
VAR_015470
R
54
H
SHPS1_HUMAN
Polymorphism
17855611
A/B
H
24
H
06
UniProt
VAR_015471
A
57
V
SHPS1_HUMAN
Polymorphism
17855612
A/B
V
27
V
07
UniProt
VAR_015472
I
61
N
SHPS1_HUMAN
Polymorphism
---
A/B
I
31
N
08
UniProt
VAR_015473
W
68
R
SHPS1_HUMAN
Polymorphism
---
A/B
W
38
R
09
UniProt
VAR_015474
G
75
A
SHPS1_HUMAN
Polymorphism
1057114
A/B
A
45
A
10
UniProt
VAR_015475
E
77
K
SHPS1_HUMAN
Polymorphism
---
A/B
E
47
K
11
UniProt
VAR_015477
N
81
H
SHPS1_HUMAN
Polymorphism
---
A/B
N
51
H
12
UniProt
VAR_015478
D
95
E
SHPS1_HUMAN
Polymorphism
---
A/B
E
65
E
13
UniProt
VAR_015479
L
96
S
SHPS1_HUMAN
Polymorphism
---
A/B
S
66
S
14
UniProt
VAR_015480
N
100
E
SHPS1_HUMAN
Unclassified
---
A/B
E
70
E
15
UniProt
VAR_015483
R
107
S
SHPS1_HUMAN
Polymorphism
17855615
A/B
S
77
S
16
UniProt
VAR_015484
G
109
S
SHPS1_HUMAN
Polymorphism
17855616
A/B
S
79
S
17
UniProt
VAR_015485
R
125
Q
SHPS1_HUMAN
Polymorphism
---
A/B
R
95
Q
18
UniProt
VAR_015486
V
132
T
SHPS1_HUMAN
Unclassified
---
A/B
T
101
T
19
UniProt
VAR_015487
F
134
L
SHPS1_HUMAN
Polymorphism
---
A/B
F
103
L
20
UniProt
VAR_015488
Q
163
D
SHPS1_HUMAN
Unclassified
---
A
B
H
120
121
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(2, 4)
Info
All Exons
Exon 1.4 (A:2-115 (gaps) | B:2-115 (gaps))
Exon 1.5 (A:115-121 (gaps) | B:115-123 (gaps...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3b/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000400068
1b
ENSE00001927472
chr20:
1875154-1875163
10
SHPS1_HUMAN
-
0
0
-
-
1.3b
ENST00000400068
3b
ENSE00001426544
chr20:
1876085-1876172
88
SHPS1_HUMAN
1-27
27
0
-
-
1.4
ENST00000400068
4
ENSE00001673100
chr20:
1895745-1896101
357
SHPS1_HUMAN
27-146
120
2
A:2-115 (gaps)
B:2-115 (gaps)
115
115
1.5
ENST00000400068
5
ENSE00001805661
chr20:
1902041-1902358
318
SHPS1_HUMAN
146-252
107
2
A:115-121 (gaps)
B:115-123 (gaps)
19
20
1.6
ENST00000400068
6
ENSE00001735773
chr20:
1902959-1903291
333
SHPS1_HUMAN
252-363
112
0
-
-
1.7
ENST00000400068
7
ENSE00000655714
chr20:
1905410-1905523
114
SHPS1_HUMAN
363-401
39
0
-
-
1.8
ENST00000400068
8
ENSE00001043117
chr20:
1908521-1908545
25
SHPS1_HUMAN
401-409
9
0
-
-
1.9b
ENST00000400068
9b
ENSE00001541433
chr20:
1915361-1915412
52
SHPS1_HUMAN
409-426
18
0
-
-
1.10b
ENST00000400068
10b
ENSE00001841036
chr20:
1917966-1920543
2578
SHPS1_HUMAN
427-508
82
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2uv3a_ (A:)
1b: SCOP_d2uv3b_ (B:)
View:
Select:
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Classes
(
)
(
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(
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Superfamilies
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(
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(
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Protein Domains
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d2uv3a_
A:
1b
d2uv3b_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_V_set_2uv3B01 (B:3-113)
1b: PFAM_V_set_2uv3B02 (B:3-113)
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Clans
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(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
Ig
(577)
Family
:
V-set
(144)
Homo sapiens (Human)
(61)
1a
V-set-2uv3B01
B:3-113
1b
V-set-2uv3B02
B:3-113
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Nucleic
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Asym.Unit (53 KB)
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