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2UUN
Asym. Unit
Info
Asym.Unit (588 KB)
Biol.Unit 1 (288 KB)
Biol.Unit 2 (290 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF C-PHYCOCYANIN FROM PHORMIDIUM, LYNGBYA SPP. (MARINE) AND SPIRULINA SP. (FRESH WATER) SHOWS TWO DIFFERENT WAYS OF ENERGY TRANSFER BETWEEN TWO HEXAMERS.
Authors
:
L. Satyanarayana, A. Patel, S. Mishra, P. K Ghosh, C. G. Suresh
Date
:
05 Mar 07 (Deposition) - 13 May 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Biol. Unit 2: M,N,O,P,Q,R,S,T,U,V,W,X (1x)
Keywords
:
Spirulina Sp, C-Phycocyanin, Electron Transport, Marine, Lyngbya Sp, Phormidium, Fresh Water
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Satyanarayana, A. Patel, S. Mishra, P. K. Ghosh, C. G. Suresh
Crystal Structure Of C-Phycocyanin From Phormidium, Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water) Shows Two Different Ways Of Energy Transfer Between Two Hexamers.
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 36)
Info
All Hetero Components
1a: BILIVERDINE IX ALPHA (BLAa)
2a: PHYCOCYANOBILIN (CYCa)
2aa: PHYCOCYANOBILIN (CYCaa)
2ab: PHYCOCYANOBILIN (CYCab)
2ac: PHYCOCYANOBILIN (CYCac)
2ad: PHYCOCYANOBILIN (CYCad)
2ae: PHYCOCYANOBILIN (CYCae)
2af: PHYCOCYANOBILIN (CYCaf)
2ag: PHYCOCYANOBILIN (CYCag)
2ah: PHYCOCYANOBILIN (CYCah)
2ai: PHYCOCYANOBILIN (CYCai)
2b: PHYCOCYANOBILIN (CYCb)
2c: PHYCOCYANOBILIN (CYCc)
2d: PHYCOCYANOBILIN (CYCd)
2e: PHYCOCYANOBILIN (CYCe)
2f: PHYCOCYANOBILIN (CYCf)
2g: PHYCOCYANOBILIN (CYCg)
2h: PHYCOCYANOBILIN (CYCh)
2i: PHYCOCYANOBILIN (CYCi)
2j: PHYCOCYANOBILIN (CYCj)
2k: PHYCOCYANOBILIN (CYCk)
2l: PHYCOCYANOBILIN (CYCl)
2m: PHYCOCYANOBILIN (CYCm)
2n: PHYCOCYANOBILIN (CYCn)
2o: PHYCOCYANOBILIN (CYCo)
2p: PHYCOCYANOBILIN (CYCp)
2q: PHYCOCYANOBILIN (CYCq)
2r: PHYCOCYANOBILIN (CYCr)
2s: PHYCOCYANOBILIN (CYCs)
2t: PHYCOCYANOBILIN (CYCt)
2u: PHYCOCYANOBILIN (CYCu)
2v: PHYCOCYANOBILIN (CYCv)
2w: PHYCOCYANOBILIN (CYCw)
2x: PHYCOCYANOBILIN (CYCx)
2y: PHYCOCYANOBILIN (CYCy)
2z: PHYCOCYANOBILIN (CYCz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BLA
1
Ligand/Ion
BILIVERDINE IX ALPHA
2
CYC
35
Ligand/Ion
PHYCOCYANOBILIN
[
close Hetero Component info
]
Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:72 , ASN A:73 , TYR A:74 , ALA A:75 , LYS A:83 , CYS A:84 , ARG A:86 , ASP A:87 , TYR A:90 , TYR A:110 , LEU A:111 , PHE A:122 , LEU A:124 , TRP A:128 , TYR A:129 , ARG D:57 , ILE D:67 , ALA D:75
BINDING SITE FOR RESIDUE CYC A 184
02
AC2
SOFTWARE
ASN B:72 , ARG B:78 , CYS B:82 , ARG B:84 , ASP B:85 , MET B:86 , ARG B:108 , LEU B:113 , LEU B:120 , THR B:122 , SER B:126
BINDING SITE FOR RESIDUE CYC B 184
03
AC3
SOFTWARE
PHE A:28 , ASN B:35 , LYS B:36 , LEU B:38 , ASP B:39 , VAL B:142 , ASN B:143 , ASP B:144 , ILE B:148 , THR B:149 , PRO B:150 , GLY B:151 , CYS B:153 , GLN G:33 , ASP G:145 , GLU G:149
BINDING SITE FOR RESIDUE BLA B 255
04
AC4
SOFTWARE
PRO C:72 , ASN C:73 , TYR C:74 , ALA C:75 , LYS C:83 , CYS C:84 , ARG C:86 , ASP C:87 , TYR C:90 , TYR C:110 , ILE C:115 , VAL C:118 , PHE C:122 , LEU C:124 , TRP C:128 , TYR C:129 , ARG F:57 , ILE F:67 , ALA F:75 , SER F:76
BINDING SITE FOR RESIDUE CYC C 184
05
AC5
SOFTWARE
ASN D:72 , ASP D:77 , ARG D:78 , ALA D:81 , CYS D:82 , ARG D:84 , ASP D:85 , MET D:86 , ARG D:108 , LEU D:113 , THR D:122 , SER D:126 , VAL D:127
BINDING SITE FOR RESIDUE CYC D 184
06
AC6
SOFTWARE
PHE C:28 , ASN D:35 , LYS D:36 , ASP D:39 , VAL D:142 , ASN D:143 , ILE D:148 , THR D:149 , PRO D:150 , GLY D:151 , CYS D:153 , GLN K:33 , ASP K:145
BINDING SITE FOR RESIDUE CYC D 255
07
AC7
SOFTWARE
ARG B:57 , ILE B:67 , TYR B:74 , ALA B:75 , THR E:66 , PRO E:72 , ASN E:73 , TYR E:74 , ALA E:75 , LYS E:83 , CYS E:84 , ARG E:86 , ASP E:87 , TYR E:90 , VAL E:118 , PHE E:122 , LEU E:124 , TRP E:128 , TYR E:129
BINDING SITE FOR RESIDUE CYC E 184
08
AC8
SOFTWARE
ASN F:72 , ALA F:73 , ARG F:78 , CYS F:82 , ARG F:84 , ASP F:85 , ARG F:108 , LEU F:113 , THR F:122 , SER F:126
BINDING SITE FOR RESIDUE CYC F 184
09
AC9
SOFTWARE
CYS A:68 , ASN F:35 , ASP F:39 , VAL F:142 , ASP F:144 , ILE F:148 , THR F:149 , PRO F:150 , GLY F:151 , CYS F:153 , GLN I:33 , ASP I:145
BINDING SITE FOR RESIDUE CYC F 255
10
BC1
SOFTWARE
VAL G:59 , THR G:66 , PRO G:72 , ASN G:73 , TYR G:74 , ALA G:75 , ARG G:79 , LYS G:83 , CYS G:84 , ARG G:86 , ASP G:87 , TYR G:90 , TYR G:110 , LEU G:111 , VAL G:118 , TRP G:128 , TYR G:129 , ARG J:57 , ILE J:67 , ALA J:75 , SER J:76
BINDING SITE FOR RESIDUE CYC G 184
11
BC2
SOFTWARE
LEU H:66 , ASN H:72 , ALA H:73 , ARG H:78 , ALA H:81 , CYS H:82 , ARG H:84 , ASP H:85 , ARG H:108 , LEU H:113 , THR H:116 , LEU H:120 , THR H:122 , SER H:126
BINDING SITE FOR RESIDUE CYC H 184
12
BC3
SOFTWARE
GLN A:33 , ASP A:145 , ASN H:35 , ASP H:39 , VAL H:142 , ASN H:143 , ILE H:148 , THR H:149 , PRO H:150 , GLY H:151 , CYS H:153
BINDING SITE FOR RESIDUE CYC H 255
13
BC4
SOFTWARE
PRO I:72 , ASN I:73 , TYR I:74 , ALA I:75 , LYS I:83 , CYS I:84 , ARG I:86 , ASP I:87 , TYR I:90 , TYR I:110 , LEU I:111 , VAL I:118 , PHE I:122 , LEU I:124 , TRP I:128 , TYR I:129 , ARG L:57 , ILE L:67 , TYR L:74 , ALA L:75 , MET L:79 , HOH L:2014
BINDING SITE FOR RESIDUE CYC I 184
14
BC5
SOFTWARE
LEU J:66 , ASN J:72 , ALA J:73 , ARG J:78 , CYS J:82 , ARG J:84 , ASP J:85 , ARG J:108 , LEU J:113 , THR J:122 , SER J:126
BINDING SITE FOR RESIDUE CYC J 184
15
BC6
SOFTWARE
GLN E:33 , ASP E:145 , PHE I:28 , ASN J:35 , ASP J:39 , ILE J:148 , THR J:149 , PRO J:150 , GLY J:151 , CYS J:153
BINDING SITE FOR RESIDUE CYC J 255
16
BC7
SOFTWARE
ARG H:57 , ILE H:67 , ALA H:75 , SER H:76 , THR K:66 , PRO K:72 , ASN K:73 , TYR K:74 , ALA K:75 , LYS K:83 , CYS K:84 , ARG K:86 , ASP K:87 , TYR K:90 , TYR K:110 , VAL K:118 , PHE K:122 , TRP K:128 , TYR K:129
BINDING SITE FOR RESIDUE CYC K 184
17
BC8
SOFTWARE
ASN L:72 , ARG L:78 , CYS L:82 , ARG L:84 , ASP L:85 , ILE L:88 , TYR L:92 , ARG L:108 , THR L:122 , PRO L:123 , SER L:126 , HOH L:2030
BINDING SITE FOR RESIDUE CYC L 184
18
BC9
SOFTWARE
GLN C:33 , ASP C:145 , ASN L:35 , LYS L:36 , ASP L:39 , VAL L:142 , ASN L:143 , ASP L:144 , ILE L:148 , THR L:149 , PRO L:150 , GLY L:151 , CYS L:153
BINDING SITE FOR RESIDUE CYC L 255
19
CC1
SOFTWARE
VAL M:59 , THR M:66 , PRO M:72 , ASN M:73 , TYR M:74 , ALA M:75 , LYS M:83 , CYS M:84 , ARG M:86 , ASP M:87 , TYR M:90 , TYR M:110 , ILE M:115 , VAL M:118 , PHE M:122 , LEU M:124 , TRP M:128 , ARG P:57 , ILE P:67 , ALA P:75 , SER P:76
BINDING SITE FOR RESIDUE CYC M 184
20
CC2
SOFTWARE
LEU N:66 , ASN N:72 , ASP N:77 , ARG N:78 , CYS N:82 , ARG N:84 , ASP N:85 , MET N:86 , ARG N:108 , CYS N:109 , THR N:122 , SER N:126 , VAL N:127
BINDING SITE FOR RESIDUE CYC N 184
21
CC3
SOFTWARE
ILE M:24 , ASN N:35 , LYS N:36 , ASP N:39 , VAL N:142 , ASN N:143 , ASP N:144 , ILE N:148 , THR N:149 , PRO N:150 , GLY N:151 , CYS N:153 , HOH N:2008 , GLN S:33 , ASP S:145
BINDING SITE FOR RESIDUE CYC N 255
22
CC4
SOFTWARE
VAL O:59 , THR O:66 , PRO O:72 , ASN O:73 , TYR O:74 , ALA O:75 , ARG O:79 , LYS O:83 , CYS O:84 , ARG O:86 , ASP O:87 , TYR O:90 , TYR O:110 , PHE O:122 , LEU O:124 , TRP O:128 , TYR O:129 , ARG R:57 , ILE R:67 , TYR R:74 , ALA R:75
BINDING SITE FOR RESIDUE CYC O 184
23
CC5
SOFTWARE
ASN P:72 , ASP P:77 , CYS P:82 , ARG P:84 , ASP P:85 , MET P:86 , ARG P:108 , LEU P:113 , TYR P:117 , LEU P:120 , THR P:122 , PRO P:123 , SER P:126 , VAL P:127
BINDING SITE FOR RESIDUE CYC P 184
24
CC6
SOFTWARE
PHE O:28 , ASN P:35 , LYS P:36 , ASP P:39 , ILE P:148 , THR P:149 , PRO P:150 , GLY P:151 , CYS P:153 , HOH P:2027 , GLN W:33 , ASP W:145
BINDING SITE FOR RESIDUE CYC P 255
25
CC7
SOFTWARE
ARG N:57 , ILE N:67 , ALA N:75 , PRO Q:72 , ASN Q:73 , TYR Q:74 , ALA Q:75 , LYS Q:83 , CYS Q:84 , ARG Q:86 , ASP Q:87 , TYR Q:90 , TYR Q:110 , VAL Q:118 , PHE Q:122 , LEU Q:124 , TRP Q:128 , TYR Q:129
BINDING SITE FOR RESIDUE CYC Q 184
26
CC8
SOFTWARE
LEU R:66 , ASN R:72 , ALA R:73 , ARG R:78 , ALA R:81 , CYS R:82 , ARG R:84 , ASP R:85 , MET R:86 , ARG R:108 , LEU R:113 , LEU R:120 , THR R:122 , PRO R:123 , SER R:126 , VAL R:127
BINDING SITE FOR RESIDUE CYC R 184
27
CC9
SOFTWARE
ALA B:32 , PHE Q:28 , ASN R:35 , LYS R:36 , ASP R:39 , VAL R:142 , ASP R:144 , ILE R:148 , THR R:149 , GLY R:151 , CYS R:153 , GLN U:33 , ASP U:145
BINDING SITE FOR RESIDUE CYC R 255
28
DC1
SOFTWARE
VAL S:59 , THR S:66 , PRO S:72 , ASN S:73 , TYR S:74 , ALA S:75 , LYS S:83 , CYS S:84 , ARG S:86 , ASP S:87 , TYR S:90 , TYR S:110 , VAL S:118 , PHE S:122 , LEU S:124 , TRP S:128 , TYR S:129 , ARG V:57 , ILE V:67 , ALA V:75 , SER V:76
BINDING SITE FOR RESIDUE CYC S 184
29
DC2
SOFTWARE
ASN T:72 , ALA T:73 , ASP T:77 , ARG T:78 , ALA T:81 , CYS T:82 , ARG T:84 , ASP T:85 , LEU T:113 , LEU T:120 , THR T:122
BINDING SITE FOR RESIDUE CYC T 184
30
DC3
SOFTWARE
GLN M:33 , ASP M:145 , PHE S:28 , ASN T:35 , LYS T:36 , LEU T:38 , ASP T:39 , VAL T:142 , ASN T:143 , ILE T:148 , THR T:149 , PRO T:150 , GLY T:151 , CYS T:153 , HOH T:2030
BINDING SITE FOR RESIDUE CYC T 255
31
DC4
SOFTWARE
VAL U:59 , THR U:66 , PRO U:72 , ASN U:73 , TYR U:74 , ALA U:75 , LYS U:83 , CYS U:84 , ARG U:86 , ASP U:87 , TYR U:110 , VAL U:118 , PHE U:122 , TYR U:129 , ARG X:57 , ILE X:67 , ALA X:75 , SER X:76
BINDING SITE FOR RESIDUE CYC U 184
32
DC5
SOFTWARE
ASN V:72 , ARG V:78 , CYS V:82 , ARG V:84 , ASP V:85 , TYR V:92 , ARG V:108 , CYS V:109 , LEU V:113 , LEU V:120 , THR V:122 , PRO V:123 , SER V:126 , VAL V:127
BINDING SITE FOR RESIDUE CYC V 184
33
DC6
SOFTWARE
ALA G:143 , GLN Q:33 , ASP Q:145 , PHE U:28 , ASN V:35 , ASP V:39 , VAL V:142 , ASN V:143 , ASP V:144 , ILE V:148 , THR V:149 , PRO V:150 , GLY V:151 , CYS V:153
BINDING SITE FOR RESIDUE CYC V 255
34
DC7
SOFTWARE
ARG T:57 , ILE T:67 , ALA T:75 , SER T:76 , VAL W:59 , THR W:66 , PRO W:72 , ASN W:73 , TYR W:74 , ALA W:75 , LYS W:83 , CYS W:84 , ARG W:86 , ASP W:87 , TYR W:90 , TYR W:110 , VAL W:118 , PHE W:122 , LEU W:124 , TRP W:128 , TYR W:129
BINDING SITE FOR RESIDUE CYC W 184
35
DC8
SOFTWARE
ASN X:72 , ASP X:77 , ARG X:78 , ALA X:81 , CYS X:82 , ARG X:84 , ASP X:85 , MET X:86 , ARG X:108 , CYS X:109 , LEU X:113 , LEU X:120 , THR X:122 , SER X:126
BINDING SITE FOR RESIDUE CYC X 184
36
DC9
SOFTWARE
GLN O:33 , ASP O:145 , ASN X:35 , ASP X:39 , VAL X:142 , ILE X:148 , THR X:149 , PRO X:150 , GLY X:151 , CYS X:153 , HOH X:2019
BINDING SITE FOR RESIDUE CYC X 255
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 24)
Info
All SCOP Domains
1a: SCOP_d2uuna_ (A:)
1b: SCOP_d2uunb_ (B:)
1c: SCOP_d2uunk_ (K:)
1d: SCOP_d2uunl_ (L:)
1e: SCOP_d2uunm_ (M:)
1f: SCOP_d2uunn_ (N:)
1g: SCOP_d2uuno_ (O:)
1h: SCOP_d2uunp_ (P:)
1i: SCOP_d2uunq_ (Q:)
1j: SCOP_d2uunr_ (R:)
1k: SCOP_d2uuns_ (S:)
1l: SCOP_d2uunt_ (T:)
1m: SCOP_d2uunc_ (C:)
1n: SCOP_d2uunu_ (U:)
1o: SCOP_d2uunv_ (V:)
1p: SCOP_d2uunw_ (W:)
1q: SCOP_d2uunx_ (X:)
1r: SCOP_d2uund_ (D:)
1s: SCOP_d2uune_ (E:)
1t: SCOP_d2uunf_ (F:)
1u: SCOP_d2uung_ (G:)
1v: SCOP_d2uunh_ (H:)
1w: SCOP_d2uuni_ (I:)
1x: SCOP_d2uunj_ (J:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Phycocyanin-like phycobilisome proteins
(65)
Protein domain
:
automated matches
(19)
Leptolyngbya sp. [TaxId: 47254]
(1)
1a
d2uuna_
A:
1b
d2uunb_
B:
1c
d2uunk_
K:
1d
d2uunl_
L:
1e
d2uunm_
M:
1f
d2uunn_
N:
1g
d2uuno_
O:
1h
d2uunp_
P:
1i
d2uunq_
Q:
1j
d2uunr_
R:
1k
d2uuns_
S:
1l
d2uunt_
T:
1m
d2uunc_
C:
1n
d2uunu_
U:
1o
d2uunv_
V:
1p
d2uunw_
W:
1q
d2uunx_
X:
1r
d2uund_
D:
1s
d2uune_
E:
1t
d2uunf_
F:
1u
d2uung_
G:
1v
d2uunh_
H:
1w
d2uuni_
I:
1x
d2uunj_
J:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2uunB00 (B:1-172)
1b: CATH_2uunF00 (F:1-172)
1c: CATH_2uunX00 (X:1-172)
1d: CATH_2uunD00 (D:1-172)
1e: CATH_2uunH00 (H:1-172)
1f: CATH_2uunJ00 (J:1-172)
1g: CATH_2uunL00 (L:1-172)
1h: CATH_2uunN00 (N:1-172)
1i: CATH_2uunP00 (P:1-172)
1j: CATH_2uunR00 (R:1-172)
1k: CATH_2uunT00 (T:1-172)
1l: CATH_2uunV00 (V:1-172)
View:
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)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Phycocyanins
(32)
Leptolyngbya sp.. Organism_taxid: 47254.
(1)
1a
2uunB00
B:1-172
1b
2uunF00
F:1-172
1c
2uunX00
X:1-172
1d
2uunD00
D:1-172
1e
2uunH00
H:1-172
1f
2uunJ00
J:1-172
1g
2uunL00
L:1-172
1h
2uunN00
N:1-172
1i
2uunP00
P:1-172
1j
2uunR00
R:1-172
1k
2uunT00
T:1-172
1l
2uunV00
V:1-172
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
Chain S
Chain T
Chain U
Chain V
Chain W
Chain X
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
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RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
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pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
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Asym.Unit (588 KB)
Header - Asym.Unit
Biol.Unit 1 (288 KB)
Header - Biol.Unit 1
Biol.Unit 2 (290 KB)
Header - Biol.Unit 2
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