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2UUM
Biol. Unit 2
Info
Asym.Unit (648 KB)
Biol.Unit 1 (320 KB)
Biol.Unit 2 (318 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF C-PHYCOCYANIN FROM PHORMIDIUM, LYNGBYA SPP. (MARINE) AND SPIRULINA SP. (FRESH WATER) SHOWS TWO DIFFERENT WAYS OF ENERGY TRANSFER BETWEEN TWO HEXAMERS.
Authors
:
L. Satyanarayana, A. Patel, S. Mishra, P. K Ghosh, C. G. Suresh
Date
:
04 Mar 07 (Deposition) - 27 May 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Biol. Unit 2: M,N,O,P,Q,R,S,T,U,V,W,X (1x)
Keywords
:
Photosynthesis, Electron Transport, Spirulina Sp, C-Phycocyanin, Phycobilisome, Marine, Transport, Lyngbya Sp, Phormidium, Chromophore, Fresh Water, Methylation, Bile Pigment
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Satyanarayana, A. Patel, S. Mishra, P. K. Ghosh, C. G. Suresh
Crystal Structure Of C-Phycocyanin From Phormidium, Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water) Shows Two Different Ways Of Energy Transfer Between Two Hexamers.
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 18)
Info
All Hetero Components
1a: BILIVERDINE IX ALPHA (BLAa)
1b: BILIVERDINE IX ALPHA (BLAb)
1c: BILIVERDINE IX ALPHA (BLAc)
1d: BILIVERDINE IX ALPHA (BLAd)
1e: BILIVERDINE IX ALPHA (BLAe)
1f: BILIVERDINE IX ALPHA (BLAf)
1g: BILIVERDINE IX ALPHA (BLAg)
1h: BILIVERDINE IX ALPHA (BLAh)
1i: BILIVERDINE IX ALPHA (BLAi)
1j: BILIVERDINE IX ALPHA (BLAj)
1k: BILIVERDINE IX ALPHA (BLAk)
1l: BILIVERDINE IX ALPHA (BLAl)
1m: BILIVERDINE IX ALPHA (BLAm)
1n: BILIVERDINE IX ALPHA (BLAn)
1o: BILIVERDINE IX ALPHA (BLAo)
1p: BILIVERDINE IX ALPHA (BLAp)
1q: BILIVERDINE IX ALPHA (BLAq)
1r: BILIVERDINE IX ALPHA (BLAr)
1s: BILIVERDINE IX ALPHA (BLAs)
1t: BILIVERDINE IX ALPHA (BLAt)
1u: BILIVERDINE IX ALPHA (BLAu)
1v: BILIVERDINE IX ALPHA (BLAv)
1w: BILIVERDINE IX ALPHA (BLAw)
1x: BILIVERDINE IX ALPHA (BLAx)
2a: PHYCOCYANOBILIN (CYCa)
2b: PHYCOCYANOBILIN (CYCb)
2c: PHYCOCYANOBILIN (CYCc)
2d: PHYCOCYANOBILIN (CYCd)
2e: PHYCOCYANOBILIN (CYCe)
2f: PHYCOCYANOBILIN (CYCf)
2g: PHYCOCYANOBILIN (CYCg)
2h: PHYCOCYANOBILIN (CYCh)
2i: PHYCOCYANOBILIN (CYCi)
2j: PHYCOCYANOBILIN (CYCj)
2k: PHYCOCYANOBILIN (CYCk)
2l: PHYCOCYANOBILIN (CYCl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BLA
11
Ligand/Ion
BILIVERDINE IX ALPHA
2
CYC
7
Ligand/Ion
PHYCOCYANOBILIN
[
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Sites
(18, 18)
Info
All Sites
01: CC1 (SOFTWARE)
02: CC2 (SOFTWARE)
03: CC3 (SOFTWARE)
04: CC4 (SOFTWARE)
05: CC5 (SOFTWARE)
06: CC6 (SOFTWARE)
07: CC7 (SOFTWARE)
08: CC8 (SOFTWARE)
09: CC9 (SOFTWARE)
10: DC1 (SOFTWARE)
11: DC2 (SOFTWARE)
12: DC3 (SOFTWARE)
13: DC4 (SOFTWARE)
14: DC5 (SOFTWARE)
15: DC6 (SOFTWARE)
16: DC7 (SOFTWARE)
17: DC8 (SOFTWARE)
18: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC1
SOFTWARE
VAL M:59 , THR M:66 , PRO M:72 , ASN M:73 , TYR M:74 , ALA M:75 , LYS M:83 , CYS M:84 , ARG M:86 , ASP M:87 , TYR M:90 , TYR M:110 , LEU M:124 , TRP M:128 , TYR M:129 , ARG P:57 , ILE P:67 , TYR P:74 , THR P:75 , SER P:76 , HOH P:2003
BINDING SITE FOR RESIDUE CYC M1084
02
CC2
SOFTWARE
ASN N:72 , ALA N:73 , CYS N:82 , ARG N:84 , ASP N:85 , ILE N:88 , ARG N:108 , LEU N:120 , THR N:122 , HOH N:2014
BINDING SITE FOR RESIDUE BLA N1082
03
CC3
SOFTWARE
PHE M:28 , ASN N:35 , LYS N:36 , ASP N:39 , VAL N:40 , ASN N:42 , ILE N:148 , THR N:149 , PRO N:150 , GLY N:151 , ASP N:152 , CYS N:153 , HOH N:2006 , HOH N:2015 , HOH N:2016 , GLN W:33 , ASP W:145 , VAL W:148
BINDING SITE FOR RESIDUE BLA N1153
04
CC4
SOFTWARE
PRO O:72 , ASN O:73 , TYR O:74 , ALA O:75 , LYS O:83 , CYS O:84 , ARG O:86 , ASP O:87 , TYR O:110 , LEU O:111 , PHE O:122 , LEU O:124 , TRP O:128 , TYR O:129 , ARG R:57 , ILE R:67 , THR R:75 , SER R:76
BINDING SITE FOR RESIDUE CYC O1084
05
CC5
SOFTWARE
LEU P:66 , ASN P:72 , ALA P:73 , ARG P:78 , CYS P:82 , ARG P:84 , ASP P:85 , ILE P:88 , ARG P:108 , LEU P:120 , THR P:122
BINDING SITE FOR RESIDUE BLA P1082
06
CC6
SOFTWARE
SER E:143 , PHE O:28 , ASN P:35 , LYS P:36 , ASP P:39 , ASN P:42 , VAL P:142 , ILE P:148 , THR P:149 , PRO P:150 , GLY P:151 , CYS P:153 , GLN U:33 , ASP U:145 , VAL U:148
BINDING SITE FOR RESIDUE BLA P1153
07
CC7
SOFTWARE
ARG N:57 , ILE N:67 , TYR N:74 , THR N:75 , SER N:76 , VAL Q:59 , THR Q:66 , PRO Q:72 , ASN Q:73 , TYR Q:74 , ALA Q:75 , LYS Q:83 , CYS Q:84 , ARG Q:86 , ASP Q:87 , TYR Q:90 , TYR Q:110 , PHE Q:122 , LEU Q:124 , TRP Q:128 , TYR Q:129
BINDING SITE FOR RESIDUE CYC Q1084
08
CC8
SOFTWARE
ASN R:72 , ALA R:73 , CYS R:82 , ARG R:84 , ASP R:85 , ILE R:88 , ARG R:108 , TYR R:117 , LEU R:120 , THR R:122
BINDING SITE FOR RESIDUE CYC R1082
09
CC9
SOFTWARE
PHE Q:28 , ASN R:35 , ASP R:39 , ASN R:42 , ILE R:148 , THR R:149 , PRO R:150 , GLY R:151 , CYS R:153 , GLN S:33 , ASP S:145 , VAL S:148
BINDING SITE FOR RESIDUE BLA R1153
10
DC1
SOFTWARE
PRO S:72 , ASN S:73 , TYR S:74 , ALA S:75 , ARG S:79 , LYS S:83 , CYS S:84 , ARG S:86 , ASP S:87 , TYR S:90 , TYR S:110 , PHE S:122 , LEU S:124 , TRP S:128 , TYR S:129 , ARG V:57 , ILE V:67 , TYR V:74 , THR V:75 , SER V:76
BINDING SITE FOR RESIDUE CYC S1084
11
DC2
SOFTWARE
ASN T:72 , ALA T:73 , ARG T:78 , CYS T:82 , ARG T:84 , ASP T:85 , MET T:86 , ILE T:88 , ARG T:108 , TYR T:117 , LEU T:120 , THR T:122 , SER T:126
BINDING SITE FOR RESIDUE BLA T1082
12
DC3
SOFTWARE
GLN Q:33 , ASP Q:145 , VAL Q:148 , PHE S:28 , ASN T:35 , ASP T:39 , ASN T:42 , VAL T:142 , ILE T:148 , THR T:149 , PRO T:150 , GLY T:151 , CYS T:153
BINDING SITE FOR RESIDUE BLA T1153
13
DC4
SOFTWARE
THR U:66 , PRO U:72 , ASN U:73 , TYR U:74 , ALA U:75 , LYS U:83 , CYS U:84 , ARG U:86 , ASP U:87 , TYR U:90 , TYR U:110 , LEU U:124 , TRP U:128 , TYR U:129 , ARG X:57 , ILE X:67 , THR X:75 , SER X:76
BINDING SITE FOR RESIDUE CYC U1084
14
DC5
SOFTWARE
ASN V:72 , ALA V:73 , ARG V:78 , CYS V:82 , ARG V:84 , ASP V:85 , THR V:122 , SER V:126
BINDING SITE FOR RESIDUE BLA V1082
15
DC6
SOFTWARE
ALA H:32 , GLN O:33 , ASP O:145 , VAL O:148 , PHE U:28 , ASN V:35 , ASP V:39 , ASN V:42 , VAL V:142 , ILE V:148 , THR V:149 , GLY V:151 , CYS V:153
BINDING SITE FOR RESIDUE BLA V1153
16
DC7
SOFTWARE
ARG T:57 , ILE T:67 , THR T:75 , SER T:76 , VAL W:59 , THR W:66 , PRO W:72 , ASN W:73 , TYR W:74 , ALA W:75 , LYS W:83 , CYS W:84 , ARG W:86 , ASP W:87 , TYR W:90 , TYR W:110 , LEU W:124 , TRP W:128 , TYR W:129 , HOH W:2013
BINDING SITE FOR RESIDUE CYC W1084
17
DC8
SOFTWARE
ASN X:72 , ALA X:73 , CYS X:82 , ARG X:84 , ASP X:85 , MET X:86 , ILE X:88 , ARG X:108 , TYR X:117 , LEU X:120 , THR X:122
BINDING SITE FOR RESIDUE BLA X1082
18
DC9
SOFTWARE
GLN M:33 , ASP M:145 , VAL M:148 , GLU M:149 , PHE W:28 , ASN X:35 , ASP X:39 , VAL X:40 , ASN X:42 , VAL X:142 , ILE X:148 , THR X:149 , PRO X:150 , GLY X:151 , CYS X:153 , HOH X:2014 , HOH X:2015
BINDING SITE FOR RESIDUE BLA X1153
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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[
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 24)
Info
All SCOP Domains
1a: SCOP_d2uumb_ (B:)
1b: SCOP_d2uumd_ (D:)
1c: SCOP_d2uumv_ (V:)
1d: SCOP_d2uumx_ (X:)
1e: SCOP_d2uumf_ (F:)
1f: SCOP_d2uumh_ (H:)
1g: SCOP_d2uumj_ (J:)
1h: SCOP_d2uuml_ (L:)
1i: SCOP_d2uumn_ (N:)
1j: SCOP_d2uump_ (P:)
1k: SCOP_d2uumr_ (R:)
1l: SCOP_d2uumt_ (T:)
2a: SCOP_d2uuma_ (A:)
2b: SCOP_d2uumc_ (C:)
2c: SCOP_d2uumu_ (U:)
2d: SCOP_d2uumw_ (W:)
2e: SCOP_d2uume_ (E:)
2f: SCOP_d2uumg_ (G:)
2g: SCOP_d2uumi_ (I:)
2h: SCOP_d2uumk_ (K:)
2i: SCOP_d2uumm_ (M:)
2j: SCOP_d2uumo_ (O:)
2k: SCOP_d2uumq_ (Q:)
2l: SCOP_d2uums_ (S:)
View:
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Classes
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)
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(
)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Phycocyanin-like phycobilisome proteins
(65)
Protein domain
:
automated matches
(19)
Spirulina sp. [TaxId: 1157]
(1)
1a
d2uumb_
B:
1b
d2uumd_
D:
1c
d2uumv_
V:
1d
d2uumx_
X:
1e
d2uumf_
F:
1f
d2uumh_
H:
1g
d2uumj_
J:
1h
d2uuml_
L:
1i
d2uumn_
N:
1j
d2uump_
P:
1k
d2uumr_
R:
1l
d2uumt_
T:
Protein domain
:
Phycocyanin alpha subunit
(16)
Spirulina sp. [TaxId: 1157]
(1)
2a
d2uuma_
A:
2b
d2uumc_
C:
2c
d2uumu_
U:
2d
d2uumw_
W:
2e
d2uume_
E:
2f
d2uumg_
G:
2g
d2uumi_
I:
2h
d2uumk_
K:
2i
d2uumm_
M:
2j
d2uumo_
O:
2k
d2uumq_
Q:
2l
d2uums_
S:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2uumB00 (B:1-172)
1b: CATH_2uumD00 (D:1-172)
1c: CATH_2uumV00 (V:1-172)
1d: CATH_2uumX00 (X:1-172)
1e: CATH_2uumF00 (F:1-172)
1f: CATH_2uumH00 (H:1-172)
1g: CATH_2uumJ00 (J:1-172)
1h: CATH_2uumL00 (L:1-172)
1i: CATH_2uumN00 (N:1-172)
1j: CATH_2uumP00 (P:1-172)
1k: CATH_2uumR00 (R:1-172)
1l: CATH_2uumT00 (T:1-172)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Phycocyanins
(32)
Spirulina sp.. Organism_taxid: 1157. Spirulina sp.. Organism_taxid: 1157.
(1)
1a
2uumB00
B:1-172
1b
2uumD00
D:1-172
1c
2uumV00
V:1-172
1d
2uumX00
X:1-172
1e
2uumF00
F:1-172
1f
2uumH00
H:1-172
1g
2uumJ00
J:1-172
1h
2uumL00
L:1-172
1i
2uumN00
N:1-172
1j
2uumP00
P:1-172
1k
2uumR00
R:1-172
1l
2uumT00
T:1-172
[
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]
Pfam Domains
(0, 0)
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Asym.Unit (648 KB)
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