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2UUL
Biol. Unit 2
Info
Asym.Unit (642 KB)
Biol.Unit 1 (316 KB)
Biol.Unit 2 (315 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF C-PHYCOCYANIN FROM PHORMIDIUM, LYNGBYA SPP. (MARINE) AND SPIRULINA SP. (FRESH WATER) SHOWS TWO DIFFERENT WAYS OF ENERGY TRANSFER BETWEEN TWO HEXAMERS.
Authors
:
L. Satyanarayana, A. Patel, S. Mishra, P. K Ghosh, C. G. Suresh
Date
:
04 Mar 07 (Deposition) - 27 May 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Biol. Unit 2: M,N,O,P,Q,R,S,T,U,V,W,X (1x)
Keywords
:
Electron Transport, C-Phycocyanin, Phycobilisome, Photosynthesis, Chromophore, Fresh Water, Methylation, Bile Pigment, Marine, Lyngbya, Spirulina, Transport, Phormidium
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Satyanarayana, A. Patel, S. Mishra, P. K. Ghosh, C. G. Suresh
Crystal Structure Of C-Phycocyanin From Phormidium, Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water) Shows Two Different Ways Of Energy Transfer Between Twohexamers.
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 18)
Info
All Hetero Components
1a: BILIVERDINE IX ALPHA (BLAa)
1b: BILIVERDINE IX ALPHA (BLAb)
1c: BILIVERDINE IX ALPHA (BLAc)
2a: PHYCOCYANOBILIN (CYCa)
2aa: PHYCOCYANOBILIN (CYCaa)
2ab: PHYCOCYANOBILIN (CYCab)
2ac: PHYCOCYANOBILIN (CYCac)
2ad: PHYCOCYANOBILIN (CYCad)
2ae: PHYCOCYANOBILIN (CYCae)
2af: PHYCOCYANOBILIN (CYCaf)
2ag: PHYCOCYANOBILIN (CYCag)
2b: PHYCOCYANOBILIN (CYCb)
2c: PHYCOCYANOBILIN (CYCc)
2d: PHYCOCYANOBILIN (CYCd)
2e: PHYCOCYANOBILIN (CYCe)
2f: PHYCOCYANOBILIN (CYCf)
2g: PHYCOCYANOBILIN (CYCg)
2h: PHYCOCYANOBILIN (CYCh)
2i: PHYCOCYANOBILIN (CYCi)
2j: PHYCOCYANOBILIN (CYCj)
2k: PHYCOCYANOBILIN (CYCk)
2l: PHYCOCYANOBILIN (CYCl)
2m: PHYCOCYANOBILIN (CYCm)
2n: PHYCOCYANOBILIN (CYCn)
2o: PHYCOCYANOBILIN (CYCo)
2p: PHYCOCYANOBILIN (CYCp)
2q: PHYCOCYANOBILIN (CYCq)
2r: PHYCOCYANOBILIN (CYCr)
2s: PHYCOCYANOBILIN (CYCs)
2t: PHYCOCYANOBILIN (CYCt)
2u: PHYCOCYANOBILIN (CYCu)
2v: PHYCOCYANOBILIN (CYCv)
2w: PHYCOCYANOBILIN (CYCw)
2x: PHYCOCYANOBILIN (CYCx)
2y: PHYCOCYANOBILIN (CYCy)
2z: PHYCOCYANOBILIN (CYCz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BLA
-1
Ligand/Ion
BILIVERDINE IX ALPHA
2
CYC
18
Ligand/Ion
PHYCOCYANOBILIN
[
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Sites
(18, 18)
Info
All Sites
01: CC1 (SOFTWARE)
02: CC2 (SOFTWARE)
03: CC3 (SOFTWARE)
04: CC4 (SOFTWARE)
05: CC5 (SOFTWARE)
06: CC6 (SOFTWARE)
07: CC7 (SOFTWARE)
08: CC8 (SOFTWARE)
09: CC9 (SOFTWARE)
10: DC1 (SOFTWARE)
11: DC2 (SOFTWARE)
12: DC3 (SOFTWARE)
13: DC4 (SOFTWARE)
14: DC5 (SOFTWARE)
15: DC6 (SOFTWARE)
16: DC7 (SOFTWARE)
17: DC8 (SOFTWARE)
18: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC1
SOFTWARE
THR M:66 , PRO M:72 , ASN M:73 , TYR M:74 , ALA M:75 , LYS M:83 , CYS M:84 , ARG M:86 , ASP M:87 , TYR M:90 , TYR M:110 , LEU M:111 , PHE M:122 , LEU M:124 , TRP M:128 , TYR M:129 , ARG P:57 , ILE P:67 , THR P:75 , SER P:76
BINDING SITE FOR RESIDUE CYC M 184
02
CC2
SOFTWARE
ASN N:72 , ALA N:73 , ASN N:77 , ARG N:78 , CYS N:82 , ARG N:84 , ASP N:85 , MET N:86 , ILE N:88 , ARG N:108 , CYS N:109 , TYR N:117 , LEU N:120 , THR N:122 , SER N:126 , VAL N:127
BINDING SITE FOR RESIDUE CYC N 184
03
CC3
SOFTWARE
PHE M:28 , ASN N:35 , LYS N:36 , ASP N:39 , ASN N:42 , VAL N:142 , ASP N:144 , ILE N:148 , THR N:149 , PRO N:150 , GLY N:151 , CYS N:153 , GLN S:33 , ASP S:145
BINDING SITE FOR RESIDUE CYC N 255
04
CC4
SOFTWARE
THR O:66 , PRO O:72 , ASN O:73 , TYR O:74 , ALA O:75 , ARG O:79 , LYS O:83 , CYS O:84 , ARG O:86 , ASP O:87 , TYR O:90 , LEU O:111 , PHE O:122 , LEU O:124 , TRP O:128 , TYR O:129 , ARG R:57 , ILE R:67 , THR R:75 , SER R:76
BINDING SITE FOR RESIDUE CYC O 184
05
CC5
SOFTWARE
ASN P:72 , ALA P:73 , ARG P:78 , CYS P:82 , ARG P:84 , ASP P:85 , ILE P:88 , ARG P:108 , TYR P:117 , LEU P:120 , THR P:122 , SER P:126 , VAL P:127
BINDING SITE FOR RESIDUE CYC P 184
06
CC6
SOFTWARE
ILE O:24 , PHE O:28 , ASN P:35 , LYS P:36 , ASP P:39 , ASN P:42 , ASP P:144 , ILE P:148 , THR P:149 , PRO P:150 , GLY P:151 , CYS P:153 , GLN W:33 , ASP W:145
BINDING SITE FOR RESIDUE CYC P 255
07
CC7
SOFTWARE
ARG N:57 , ILE N:67 , THR N:75 , SER N:76 , VAL Q:59 , THR Q:66 , PRO Q:72 , ASN Q:73 , TYR Q:74 , ALA Q:75 , ARG Q:79 , LYS Q:83 , CYS Q:84 , ARG Q:86 , ASP Q:87 , TYR Q:90 , TYR Q:110 , LEU Q:124 , TRP Q:128 , TYR Q:129
BINDING SITE FOR RESIDUE CYC Q 184
08
CC8
SOFTWARE
ASN R:72 , ALA R:73 , ASN R:77 , ARG R:78 , CYS R:82 , ARG R:84 , ASP R:85 , ILE R:88 , ARG R:108 , LEU R:120 , THR R:122
BINDING SITE FOR RESIDUE CYC R 184
09
CC9
SOFTWARE
PHE Q:28 , ASN R:35 , ASP R:39 , ASN R:42 , VAL R:142 , ILE R:148 , THR R:149 , PRO R:150 , GLY R:151 , CYS R:153 , GLN U:33 , ASP U:145 , ALA U:148 , GLU U:149
BINDING SITE FOR RESIDUE CYC R 255
10
DC1
SOFTWARE
PRO S:72 , ASN S:73 , TYR S:74 , ALA S:75 , ARG S:79 , LYS S:83 , CYS S:84 , ARG S:86 , ASP S:87 , TYR S:90 , TYR S:110 , PHE S:122 , LEU S:124 , TRP S:128 , TYR S:129 , ARG V:57 , ILE V:67 , THR V:75 , SER V:76
BINDING SITE FOR RESIDUE CYC S 184
11
DC2
SOFTWARE
ASN T:72 , ALA T:73 , ASN T:77 , ARG T:78 , CYS T:82 , ARG T:84 , ASP T:85 , ILE T:88 , ARG T:108 , TYR T:117 , LEU T:120 , THR T:122 , VAL T:127
BINDING SITE FOR RESIDUE CYC T 184
12
DC3
SOFTWARE
GLN M:33 , ASP M:145 , PHE S:28 , ASN T:35 , LYS T:36 , ASP T:39 , ASN T:42 , ILE T:148 , THR T:149 , PRO T:150 , GLY T:151 , CYS T:153
BINDING SITE FOR RESIDUE CYC T 255
13
DC4
SOFTWARE
VAL U:59 , PRO U:72 , ASN U:73 , TYR U:74 , ALA U:75 , LYS U:83 , CYS U:84 , ARG U:86 , ASP U:87 , TYR U:90 , TYR U:110 , PHE U:122 , LEU U:124 , TRP U:128 , TYR U:129 , ARG X:57 , ILE X:67 , THR X:75 , SER X:76
BINDING SITE FOR RESIDUE CYC U 184
14
DC5
SOFTWARE
LEU V:66 , ASN V:72 , ALA V:73 , ARG V:78 , CYS V:82 , ARG V:84 , ASP V:85 , ILE V:88 , ARG V:108 , LEU V:120 , THR V:122
BINDING SITE FOR RESIDUE CYC V 184
15
DC6
SOFTWARE
GLN Q:33 , ASP Q:145 , PHE U:28 , ASN V:35 , ASP V:39 , ASN V:42 , VAL V:142 , ILE V:148 , THR V:149 , PRO V:150 , GLY V:151 , CYS V:153
BINDING SITE FOR RESIDUE CYC V 255
16
DC7
SOFTWARE
ARG T:57 , ILE T:67 , THR T:75 , SER T:76 , PRO W:72 , ASN W:73 , TYR W:74 , ALA W:75 , ARG W:79 , LYS W:83 , CYS W:84 , ARG W:86 , ASP W:87 , TYR W:90 , TYR W:110 , LEU W:124 , TRP W:128 , TYR W:129
BINDING SITE FOR RESIDUE CYC W 184
17
DC8
SOFTWARE
ASN X:72 , ALA X:73 , ASN X:77 , CYS X:82 , ARG X:84 , ASP X:85 , ILE X:88 , ARG X:108 , TYR X:117 , LEU X:120 , THR X:122
BINDING SITE FOR RESIDUE CYC X 184
18
DC9
SOFTWARE
GLN O:33 , ASP O:145 , ILE W:24 , PHE W:28 , ASN X:35 , LYS X:36 , ASP X:39 , ASN X:42 , ILE X:148 , THR X:149 , PRO X:150 , GLY X:151 , CYS X:153
BINDING SITE FOR RESIDUE CYC X 255
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 24)
Info
All SCOP Domains
1a: SCOP_d2uula_ (A:)
1b: SCOP_d2uulb_ (B:)
1c: SCOP_d2uulk_ (K:)
1d: SCOP_d2uull_ (L:)
1e: SCOP_d2uulm_ (M:)
1f: SCOP_d2uuln_ (N:)
1g: SCOP_d2uulo_ (O:)
1h: SCOP_d2uulp_ (P:)
1i: SCOP_d2uulq_ (Q:)
1j: SCOP_d2uulr_ (R:)
1k: SCOP_d2uuls_ (S:)
1l: SCOP_d2uult_ (T:)
1m: SCOP_d2uulc_ (C:)
1n: SCOP_d2uulu_ (U:)
1o: SCOP_d2uulv_ (V:)
1p: SCOP_d2uulw_ (W:)
1q: SCOP_d2uulx_ (X:)
1r: SCOP_d2uuld_ (D:)
1s: SCOP_d2uule_ (E:)
1t: SCOP_d2uulf_ (F:)
1u: SCOP_d2uulg_ (G:)
1v: SCOP_d2uulh_ (H:)
1w: SCOP_d2uuli_ (I:)
1x: SCOP_d2uulj_ (J:)
View:
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Classes
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)
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)
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)
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)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Phycocyanin-like phycobilisome proteins
(65)
Protein domain
:
automated matches
(19)
Phormidium sp. [TaxId: 1199]
(1)
1a
d2uula_
A:
1b
d2uulb_
B:
1c
d2uulk_
K:
1d
d2uull_
L:
1e
d2uulm_
M:
1f
d2uuln_
N:
1g
d2uulo_
O:
1h
d2uulp_
P:
1i
d2uulq_
Q:
1j
d2uulr_
R:
1k
d2uuls_
S:
1l
d2uult_
T:
1m
d2uulc_
C:
1n
d2uulu_
U:
1o
d2uulv_
V:
1p
d2uulw_
W:
1q
d2uulx_
X:
1r
d2uuld_
D:
1s
d2uule_
E:
1t
d2uulf_
F:
1u
d2uulg_
G:
1v
d2uulh_
H:
1w
d2uuli_
I:
1x
d2uulj_
J:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2uulB00 (B:1-172)
1b: CATH_2uulF00 (F:1-172)
1c: CATH_2uulD00 (D:1-172)
1d: CATH_2uulH00 (H:1-172)
1e: CATH_2uulJ00 (J:1-172)
1f: CATH_2uulL00 (L:1-172)
1g: CATH_2uulN00 (N:1-172)
1h: CATH_2uulP00 (P:1-172)
1i: CATH_2uulR00 (R:1-172)
1j: CATH_2uulT00 (T:1-172)
1k: CATH_2uulV00 (V:1-172)
1l: CATH_2uulX00 (X:1-172)
View:
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Phycocyanins
(32)
Phormidium sp.. Organism_taxid: 1199. Phormidium sp.. Organism_taxid:1199. Phormidium sp.. Organism_taxid: 1199. Phormidium sp.. Organism_taxid: 1199.
(1)
1a
2uulB00
B:1-172
1b
2uulF00
F:1-172
1c
2uulD00
D:1-172
1d
2uulH00
H:1-172
1e
2uulJ00
J:1-172
1f
2uulL00
L:1-172
1g
2uulN00
N:1-172
1h
2uulP00
P:1-172
1i
2uulR00
R:1-172
1j
2uulT00
T:1-172
1k
2uulV00
V:1-172
1l
2uulX00
X:1-172
[
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Pfam Domains
(0, 0)
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Asym.Unit (642 KB)
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