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2UUL
Biol. Unit 1
Info
Asym.Unit (642 KB)
Biol.Unit 1 (316 KB)
Biol.Unit 2 (315 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF C-PHYCOCYANIN FROM PHORMIDIUM, LYNGBYA SPP. (MARINE) AND SPIRULINA SP. (FRESH WATER) SHOWS TWO DIFFERENT WAYS OF ENERGY TRANSFER BETWEEN TWO HEXAMERS.
Authors
:
L. Satyanarayana, A. Patel, S. Mishra, P. K Ghosh, C. G. Suresh
Date
:
04 Mar 07 (Deposition) - 27 May 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Biol. Unit 2: M,N,O,P,Q,R,S,T,U,V,W,X (1x)
Keywords
:
Electron Transport, C-Phycocyanin, Phycobilisome, Photosynthesis, Chromophore, Fresh Water, Methylation, Bile Pigment, Marine, Lyngbya, Spirulina, Transport, Phormidium
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Satyanarayana, A. Patel, S. Mishra, P. K. Ghosh, C. G. Suresh
Crystal Structure Of C-Phycocyanin From Phormidium, Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water) Shows Two Different Ways Of Energy Transfer Between Twohexamers.
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(2, 18)
Info
All Hetero Components
1a: BILIVERDINE IX ALPHA (BLAa)
1b: BILIVERDINE IX ALPHA (BLAb)
1c: BILIVERDINE IX ALPHA (BLAc)
2a: PHYCOCYANOBILIN (CYCa)
2aa: PHYCOCYANOBILIN (CYCaa)
2ab: PHYCOCYANOBILIN (CYCab)
2ac: PHYCOCYANOBILIN (CYCac)
2ad: PHYCOCYANOBILIN (CYCad)
2ae: PHYCOCYANOBILIN (CYCae)
2af: PHYCOCYANOBILIN (CYCaf)
2ag: PHYCOCYANOBILIN (CYCag)
2b: PHYCOCYANOBILIN (CYCb)
2c: PHYCOCYANOBILIN (CYCc)
2d: PHYCOCYANOBILIN (CYCd)
2e: PHYCOCYANOBILIN (CYCe)
2f: PHYCOCYANOBILIN (CYCf)
2g: PHYCOCYANOBILIN (CYCg)
2h: PHYCOCYANOBILIN (CYCh)
2i: PHYCOCYANOBILIN (CYCi)
2j: PHYCOCYANOBILIN (CYCj)
2k: PHYCOCYANOBILIN (CYCk)
2l: PHYCOCYANOBILIN (CYCl)
2m: PHYCOCYANOBILIN (CYCm)
2n: PHYCOCYANOBILIN (CYCn)
2o: PHYCOCYANOBILIN (CYCo)
2p: PHYCOCYANOBILIN (CYCp)
2q: PHYCOCYANOBILIN (CYCq)
2r: PHYCOCYANOBILIN (CYCr)
2s: PHYCOCYANOBILIN (CYCs)
2t: PHYCOCYANOBILIN (CYCt)
2u: PHYCOCYANOBILIN (CYCu)
2v: PHYCOCYANOBILIN (CYCv)
2w: PHYCOCYANOBILIN (CYCw)
2x: PHYCOCYANOBILIN (CYCx)
2y: PHYCOCYANOBILIN (CYCy)
2z: PHYCOCYANOBILIN (CYCz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BLA
3
Ligand/Ion
BILIVERDINE IX ALPHA
2
CYC
15
Ligand/Ion
PHYCOCYANOBILIN
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:72 , ASN A:73 , TYR A:74 , ALA A:75 , ARG A:79 , LYS A:83 , CYS A:84 , ARG A:86 , ASP A:87 , TYR A:90 , TYR A:110 , LEU A:111 , PHE A:122 , LEU A:124 , TRP A:128 , TYR A:129 , ARG D:57 , ILE D:67 , TYR D:74 , THR D:75 , SER D:76
BINDING SITE FOR RESIDUE CYC A 184
02
AC2
SOFTWARE
ASN B:72 , ALA B:73 , ARG B:78 , CYS B:82 , ARG B:84 , ASP B:85 , MET B:86 , ILE B:88 , ARG B:108 , TYR B:117 , LEU B:120 , THR B:122 , VAL B:127
BINDING SITE FOR RESIDUE BLA B 184
03
AC3
SOFTWARE
PHE A:28 , ASN B:35 , LYS B:36 , ASP B:39 , ASN B:42 , ILE B:148 , THR B:149 , PRO B:150 , GLY B:151 , CYS B:153 , GLN G:33 , ASP G:145
BINDING SITE FOR RESIDUE BLA B 255
04
AC4
SOFTWARE
VAL C:59 , PRO C:72 , ASN C:73 , TYR C:74 , ALA C:75 , ARG C:79 , LYS C:83 , CYS C:84 , ARG C:86 , ASP C:87 , TYR C:90 , TYR C:110 , LEU C:111 , PHE C:122 , LEU C:124 , TRP C:128 , TYR C:129 , ARG F:57 , ILE F:67 , THR F:75 , SER F:76
BINDING SITE FOR RESIDUE CYC C 184
05
AC5
SOFTWARE
ASN D:72 , ALA D:73 , ASN D:77 , CYS D:82 , ARG D:84 , ASP D:85 , MET D:86 , ILE D:88 , ARG D:108
BINDING SITE FOR RESIDUE CYC D 184
06
AC6
SOFTWARE
ILE C:24 , PHE C:28 , ASN D:35 , LYS D:36 , ASP D:39 , ASN D:42 , ILE D:148 , THR D:149 , PRO D:150 , GLY D:151 , CYS D:153 , GLN K:33 , ASP K:145
BINDING SITE FOR RESIDUE BLA D 255
07
AC7
SOFTWARE
ARG B:57 , ILE B:67 , TYR B:74 , THR B:75 , SER B:76 , PRO E:72 , ASN E:73 , TYR E:74 , ALA E:75 , ARG E:79 , LYS E:83 , CYS E:84 , ARG E:86 , ASP E:87 , TYR E:90 , PHE E:122 , LEU E:124 , TRP E:128 , TYR E:129
BINDING SITE FOR RESIDUE CYC E 184
08
AC8
SOFTWARE
LEU F:66 , ASN F:72 , ALA F:73 , ASN F:77 , CYS F:82 , ARG F:84 , ASP F:85 , ILE F:88 , ARG F:108 , TYR F:117 , LEU F:120 , THR F:122 , SER F:126
BINDING SITE FOR RESIDUE CYC F 184
09
AC9
SOFTWARE
CYS A:68 , PHE E:28 , ASN F:35 , ASP F:39 , ASN F:42 , VAL F:142 , ILE F:148 , THR F:149 , PRO F:150 , GLY F:151 , CYS F:153 , GLN I:33 , ASP I:145
BINDING SITE FOR RESIDUE CYC F 255
10
BC1
SOFTWARE
THR G:66 , PRO G:72 , ASN G:73 , TYR G:74 , ALA G:75 , LYS G:83 , CYS G:84 , ARG G:86 , ASP G:87 , TYR G:90 , TYR G:110 , LEU G:111 , LEU G:124 , TRP G:128 , TYR G:129 , ARG J:57 , ILE J:67 , THR J:75 , SER J:76
BINDING SITE FOR RESIDUE CYC G 184
11
BC2
SOFTWARE
ASN H:72 , ALA H:73 , ASN H:77 , CYS H:82 , ARG H:84 , ASP H:85 , ILE H:88 , ARG H:108 , LEU H:120 , THR H:122 , SER H:126
BINDING SITE FOR RESIDUE CYC H 184
12
BC3
SOFTWARE
GLN A:33 , ASP A:145 , ILE G:24 , PHE G:28 , ASN H:35 , ASP H:39 , ASN H:42 , VAL H:142 , ASP H:144 , ILE H:148 , THR H:149 , PRO H:150 , GLY H:151 , CYS H:153
BINDING SITE FOR RESIDUE CYC H 255
13
BC4
SOFTWARE
THR I:66 , PRO I:72 , ASN I:73 , TYR I:74 , ALA I:75 , ARG I:79 , LYS I:83 , CYS I:84 , ARG I:86 , ASP I:87 , TYR I:90 , TYR I:110 , LEU I:111 , PHE I:122 , LEU I:124 , TRP I:128 , TYR I:129 , ARG L:57 , ILE L:67 , THR L:75 , SER L:76 , HOH L:2007
BINDING SITE FOR RESIDUE CYC I 184
14
BC5
SOFTWARE
ASN J:72 , ALA J:73 , ASN J:77 , ARG J:78 , CYS J:82 , ARG J:84 , ASP J:85 , ILE J:88 , ARG J:108 , TYR J:117 , LEU J:120 , THR J:122 , SER J:126 , VAL J:127
BINDING SITE FOR RESIDUE CYC J 184
15
BC6
SOFTWARE
GLN E:33 , ASP E:145 , PHE I:28 , ASN J:35 , LYS J:36 , ASP J:39 , VAL J:142 , ILE J:148 , THR J:149 , PRO J:150 , GLY J:151 , CYS J:153
BINDING SITE FOR RESIDUE CYC J 255
16
BC7
SOFTWARE
ARG H:57 , ILE H:67 , THR H:75 , SER H:76 , PRO K:72 , ASN K:73 , TYR K:74 , ALA K:75 , ARG K:79 , LYS K:83 , CYS K:84 , ARG K:86 , ASP K:87 , TYR K:90 , TYR K:110 , PHE K:122 , LEU K:124 , TRP K:128 , TYR K:129
BINDING SITE FOR RESIDUE CYC K 184
17
BC8
SOFTWARE
ASN L:72 , ALA L:73 , ASN L:77 , ARG L:78 , CYS L:82 , ARG L:84 , ASP L:85 , ILE L:88 , LEU L:120 , THR L:122 , VAL L:127
BINDING SITE FOR RESIDUE CYC L 184
18
BC9
SOFTWARE
GLN C:33 , ASP C:145 , VAL C:148 , ILE K:24 , PHE K:28 , ASN L:35 , LYS L:36 , ASP L:39 , ASN L:42 , ILE L:148 , THR L:149 , PRO L:150 , GLY L:151 , CYS L:153 , HOH L:2004
BINDING SITE FOR RESIDUE CYC L 255
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 24)
Info
All SCOP Domains
1a: SCOP_d2uula_ (A:)
1b: SCOP_d2uulb_ (B:)
1c: SCOP_d2uulk_ (K:)
1d: SCOP_d2uull_ (L:)
1e: SCOP_d2uulm_ (M:)
1f: SCOP_d2uuln_ (N:)
1g: SCOP_d2uulo_ (O:)
1h: SCOP_d2uulp_ (P:)
1i: SCOP_d2uulq_ (Q:)
1j: SCOP_d2uulr_ (R:)
1k: SCOP_d2uuls_ (S:)
1l: SCOP_d2uult_ (T:)
1m: SCOP_d2uulc_ (C:)
1n: SCOP_d2uulu_ (U:)
1o: SCOP_d2uulv_ (V:)
1p: SCOP_d2uulw_ (W:)
1q: SCOP_d2uulx_ (X:)
1r: SCOP_d2uuld_ (D:)
1s: SCOP_d2uule_ (E:)
1t: SCOP_d2uulf_ (F:)
1u: SCOP_d2uulg_ (G:)
1v: SCOP_d2uulh_ (H:)
1w: SCOP_d2uuli_ (I:)
1x: SCOP_d2uulj_ (J:)
View:
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Classes
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)
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)
Folds
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)
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)
(
)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Phycocyanin-like phycobilisome proteins
(65)
Protein domain
:
automated matches
(19)
Phormidium sp. [TaxId: 1199]
(1)
1a
d2uula_
A:
1b
d2uulb_
B:
1c
d2uulk_
K:
1d
d2uull_
L:
1e
d2uulm_
M:
1f
d2uuln_
N:
1g
d2uulo_
O:
1h
d2uulp_
P:
1i
d2uulq_
Q:
1j
d2uulr_
R:
1k
d2uuls_
S:
1l
d2uult_
T:
1m
d2uulc_
C:
1n
d2uulu_
U:
1o
d2uulv_
V:
1p
d2uulw_
W:
1q
d2uulx_
X:
1r
d2uuld_
D:
1s
d2uule_
E:
1t
d2uulf_
F:
1u
d2uulg_
G:
1v
d2uulh_
H:
1w
d2uuli_
I:
1x
d2uulj_
J:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2uulB00 (B:1-172)
1b: CATH_2uulF00 (F:1-172)
1c: CATH_2uulD00 (D:1-172)
1d: CATH_2uulH00 (H:1-172)
1e: CATH_2uulJ00 (J:1-172)
1f: CATH_2uulL00 (L:1-172)
1g: CATH_2uulN00 (N:1-172)
1h: CATH_2uulP00 (P:1-172)
1i: CATH_2uulR00 (R:1-172)
1j: CATH_2uulT00 (T:1-172)
1k: CATH_2uulV00 (V:1-172)
1l: CATH_2uulX00 (X:1-172)
View:
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(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Phycocyanins
(32)
Phormidium sp.. Organism_taxid: 1199. Phormidium sp.. Organism_taxid:1199. Phormidium sp.. Organism_taxid: 1199. Phormidium sp.. Organism_taxid: 1199.
(1)
1a
2uulB00
B:1-172
1b
2uulF00
F:1-172
1c
2uulD00
D:1-172
1d
2uulH00
H:1-172
1e
2uulJ00
J:1-172
1f
2uulL00
L:1-172
1g
2uulN00
N:1-172
1h
2uulP00
P:1-172
1i
2uulR00
R:1-172
1j
2uulT00
T:1-172
1k
2uulV00
V:1-172
1l
2uulX00
X:1-172
[
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]
Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (642 KB)
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Biol.Unit 1 (316 KB)
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