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2UUI
Asym. Unit
Info
Asym.Unit (42 KB)
Biol.Unit 1 (98 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN LEUKOTRIENE C4 SYNTHASE
Authors
:
D. Martinez Molina, A. Wetterholm, A. Kohl, A. A. Mccarthy, D. Niegowski, E. Ohlson, T. Hammarberg, S. Eshaghi, J. Z. Haeggstrom, P. Nordlund
Date
:
02 Mar 07 (Deposition) - 17 Jul 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Leukotriene Signalling, Leukotriene Biosynthesis, Membrane, Eicosanoid, Transmembrane, Membrane Protein, Apo, Lyase, Mapeg, Human, Ltc4S, Enzyme, Trimer
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Martinez Molina, A. Wetterholm, A. Kohl, A. A. Mccarthy, D. Niegowski, E. Ohlson, T. Hammarberg, S. Eshaghi, J. Z. Haeggstrom, P. Nordlund
Structural Basis For Synthesis Of Inflammatory Mediators By Human Leukotriene C4 Synthase.
Nature V. 448 613 2007
[
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Hetero Components
(4, 21)
Info
All Hetero Components
1a: DODECYL-BETA-D-MALTOSIDE (LMTa)
1b: DODECYL-BETA-D-MALTOSIDE (LMTb)
2a: NICKEL (II) ION (NIa)
2b: NICKEL (II) ION (NIb)
2c: NICKEL (II) ION (NIc)
3a: PALMITIC ACID (PLMa)
3b: PALMITIC ACID (PLMb)
3c: PALMITIC ACID (PLMc)
3d: PALMITIC ACID (PLMd)
3e: PALMITIC ACID (PLMe)
3f: PALMITIC ACID (PLMf)
3g: PALMITIC ACID (PLMg)
3h: PALMITIC ACID (PLMh)
3i: PALMITIC ACID (PLMi)
3j: PALMITIC ACID (PLMj)
3k: PALMITIC ACID (PLMk)
3l: PALMITIC ACID (PLMl)
3m: PALMITIC ACID (PLMm)
3n: PALMITIC ACID (PLMn)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
LMT
2
Ligand/Ion
DODECYL-BETA-D-MALTOSIDE
2
NI
3
Ligand/Ion
NICKEL (II) ION
3
PLM
14
Ligand/Ion
PALMITIC ACID
4
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:-1 , HIS A:1
BINDING SITE FOR RESIDUE NI A1151
02
AC2
SOFTWARE
HIS A:-4 , HIS A:-2
BINDING SITE FOR RESIDUE NI A1152
03
AC3
SOFTWARE
HIS A:-2 , HOH A:2001
BINDING SITE FOR RESIDUE NI A1153
04
AC4
SOFTWARE
TYR A:109 , ARG A:113 , TRP A:116 , LMT A:1155
BINDING SITE FOR RESIDUE LMT A1154
05
AC5
SOFTWARE
ILE A:27 , ARG A:31 , ARG A:104 , LEU A:108 , TYR A:109 , TRP A:116 , LMT A:1154 , PLM A:1160 , SO4 A:1165 , HOH A:2101 , HOH A:2102 , HOH A:2105
BINDING SITE FOR RESIDUE LMT A1155
06
AC6
SOFTWARE
PRO A:132 , LEU A:135
BINDING SITE FOR RESIDUE PLM A1170
07
AC7
SOFTWARE
LEU A:84
BINDING SITE FOR RESIDUE PLM A1171
08
AC8
SOFTWARE
LEU A:14 , GLY A:77 , LEU A:81 , LEU A:84
BINDING SITE FOR RESIDUE PLM A1173
09
AC9
SOFTWARE
LEU A:18 , GLN A:95 , HOH A:2016
BINDING SITE FOR RESIDUE PLM A1156
10
BC1
SOFTWARE
LEU A:7 , PHE A:130 , PLM A:1159 , PLM A:1161 , HOH A:2087
BINDING SITE FOR RESIDUE PLM A1157
11
BC2
SOFTWARE
LEU A:14 , PHE A:88
BINDING SITE FOR RESIDUE PLM A1158
12
BC3
SOFTWARE
LEU A:13 , PHE A:130 , PLM A:1157
BINDING SITE FOR RESIDUE PLM A1159
13
BC4
SOFTWARE
ARG A:99 , GLN A:102
BINDING SITE FOR RESIDUE PLM A1175
14
BC5
SOFTWARE
LMT A:1155
BINDING SITE FOR RESIDUE PLM A1160
15
BC6
SOFTWARE
HIS A:75 , GLU A:76 , GLY A:77 , ARG A:144 , PLM A:1157 , PLM A:1162 , PLM A:1163 , HOH A:2062 , HOH A:2064
BINDING SITE FOR RESIDUE PLM A1161
16
BC7
SOFTWARE
GLU A:4 , GLY A:71 , ILE A:72 , PLM A:1161 , PLM A:1163 , HOH A:2008 , HOH A:2106
BINDING SITE FOR RESIDUE PLM A1162
17
BC8
SOFTWARE
HIS A:0 , LYS A:2 , HIS A:75 , ARG A:136 , PLM A:1161 , PLM A:1162
BINDING SITE FOR RESIDUE PLM A1163
18
BC9
SOFTWARE
SER A:100 , ALA A:101 , GLN A:102 , HOH A:2108
BINDING SITE FOR RESIDUE SO4 A1164
19
CC1
SOFTWARE
ASN A:55 , TYR A:93 , ARG A:104 , LEU A:108 , LMT A:1155 , HOH A:2102 , HOH A:2109 , HOH A:2110
BINDING SITE FOR RESIDUE SO4 A1165
[
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]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_042736 (R142Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_042736
R
142
Q
LTC4S_HUMAN
Polymorphism
11541078
A
R
142
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FLAP_GST2_LTC4S (A:42-56)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FLAP_GST2_LTC4S
PS01297
FLAP/GST2/LTC4S family signature.
LTC4S_HUMAN
42-56
1
A:42-56
[
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Exons
(5, 5)
Info
All Exons
Exon 1.1c (A:1-20)
Exon 1.3b (A:20-53)
Exon 1.3f (A:53-77)
Exon 1.3g (A:77-104)
Exon 1.4e (A:104-150)
View:
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All Exon Boundaries
1: Boundary -/1.1c
2: Boundary 1.1c/1.3b
3: Boundary 1.3b/1.3f
4: Boundary 1.3f/1.3g
5: Boundary 1.3g/1.4e
6: Boundary 1.4e/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000292596
1c
ENSE00001194180
chr5:
179220987-179221139
153
LTC4S_HUMAN
1-20
20
1
A:1-20
20
1.3b
ENST00000292596
3b
ENSE00001056000
chr5:
179222585-179222684
100
LTC4S_HUMAN
20-53
34
1
A:20-53
34
1.3f
ENST00000292596
3f
ENSE00001255861
chr5:
179222787-179222857
71
LTC4S_HUMAN
53-77
25
1
A:53-77
25
1.3g
ENST00000292596
3g
ENSE00001056001
chr5:
179222942-179223023
82
LTC4S_HUMAN
77-104
28
1
A:77-104
28
1.4e
ENST00000292596
4e
ENSE00002050377
chr5:
179223254-179223513
260
LTC4S_HUMAN
104-150
47
1
A:104-150
47
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2uuia1 (A:2-147)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
MAPEG domain-like
(9)
Superfamily
:
MAPEG domain-like
(9)
Family
:
MAPEG domain
(7)
Protein domain
:
Leukotriene C4 synthase
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2uuia1
A:2-147
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2uuiA00 (A:-5-150)
View:
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(
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(
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
MAPEG domain-like
(7)
Human (Homo sapiens)
(6)
1a
2uuiA00
A:-5-150
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
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Protein
Nucleic
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Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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