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2TMG
Asym. Unit
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Asym.Unit (358 KB)
Biol.Unit 1 (353 KB)
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(1)
Title
:
THERMOTOGA MARITIMA GLUTAMATE DEHYDROGENASE MUTANT S128R, T158E, N117R, S160E
Authors
:
S. Knapp, J. H. G. Lebbink, J. Van Der Oost, W. M. De Vos, D. Rice, R. Ladenstein
Date
:
04 Dec 98 (Deposition) - 08 Dec 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Metabolic Role, Glutamate, Dehydrogenase, Mutant, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. H. Lebbink, S. Knapp, J. Van Der Oost, D. Rice, R. Ladenstein, W. M. De Vos
Engineering Activity And Stability Of Thermotoga Maritima Glutamate Dehydrogenase. Ii: Construction Of A 16-Residue Ion-Pair Network At The Subunit Interface.
J. Mol. Biol. V. 289 357 1999
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sorry, no Info available
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 6)
Info
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1: GLFV_DEHYDROGENASE (A:98-111,B:98-111,C:98-111,D:98-11...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLFV_DEHYDROGENASE
PS00074
Glu / Leu / Phe / Val dehydrogenases active site.
DHE3_THEMA
99-112
6
A:98-111
B:98-111
C:98-111
D:98-111
E:98-111
F:98-111
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d2tmga2 (A:4-178)
1b: SCOP_d2tmge2 (E:4-178)
1c: SCOP_d2tmgf2 (F:4-178)
1d: SCOP_d2tmgb2 (B:4-178)
1e: SCOP_d2tmgc2 (C:4-178)
1f: SCOP_d2tmgd2 (D:4-178)
2a: SCOP_d2tmga1 (A:179-411)
2b: SCOP_d2tmge1 (E:179-411)
2c: SCOP_d2tmgf1 (F:179-411)
2d: SCOP_d2tmgb1 (B:179-411)
2e: SCOP_d2tmgc1 (C:179-411)
2f: SCOP_d2tmgd1 (D:179-411)
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Protein Domains
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)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Superfamily
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Family
:
Aminoacid dehydrogenases
(28)
Protein domain
:
Glutamate dehydrogenase
(19)
Thermotoga maritima [TaxId: 2336]
(3)
1a
d2tmga2
A:4-178
1b
d2tmge2
E:4-178
1c
d2tmgf2
F:4-178
1d
d2tmgb2
B:4-178
1e
d2tmgc2
C:4-178
1f
d2tmgd2
D:4-178
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Aminoacid dehydrogenase-like, C-terminal domain
(67)
Protein domain
:
Glutamate dehydrogenase
(19)
Thermotoga maritima [TaxId: 2336]
(3)
2a
d2tmga1
A:179-411
2b
d2tmge1
E:179-411
2c
d2tmgf1
F:179-411
2d
d2tmgb1
B:179-411
2e
d2tmgc1
C:179-411
2f
d2tmgd1
D:179-411
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_2tmgA01 (A:35-178)
1b: CATH_2tmgB01 (B:35-178)
1c: CATH_2tmgC01 (C:35-178)
1d: CATH_2tmgD01 (D:35-178)
1e: CATH_2tmgE01 (E:35-178)
1f: CATH_2tmgF01 (F:35-178)
2a: CATH_2tmgA02 (A:179-411)
2b: CATH_2tmgB02 (B:179-411)
2c: CATH_2tmgC02 (C:179-411)
2d: CATH_2tmgD02 (D:179-411)
2e: CATH_2tmgE02 (E:179-411)
2f: CATH_2tmgF02 (F:179-411)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Leucine Dehydrogenase; Chain A, domain 1
(52)
Homologous Superfamily
:
Leucine Dehydrogenase, chain A, domain 1
(52)
Thermotoga maritima. Organism_taxid: 2336.
(3)
1a
2tmgA01
A:35-178
1b
2tmgB01
B:35-178
1c
2tmgC01
C:35-178
1d
2tmgD01
D:35-178
1e
2tmgE01
E:35-178
1f
2tmgF01
F:35-178
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Thermotoga maritima. Organism_taxid: 2336.
(10)
2a
2tmgA02
A:179-411
2b
2tmgB02
B:179-411
2c
2tmgC02
C:179-411
2d
2tmgD02
D:179-411
2e
2tmgE02
E:179-411
2f
2tmgF02
F:179-411
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_ELFV_dehydrog_2tmgF01 (F:179-411)
1b: PFAM_ELFV_dehydrog_2tmgF02 (F:179-411)
1c: PFAM_ELFV_dehydrog_2tmgF03 (F:179-411)
1d: PFAM_ELFV_dehydrog_2tmgF04 (F:179-411)
1e: PFAM_ELFV_dehydrog_2tmgF05 (F:179-411)
1f: PFAM_ELFV_dehydrog_2tmgF06 (F:179-411)
2a: PFAM_ELFV_dehydrog_N_2tmgF07 (F:33-163)
2b: PFAM_ELFV_dehydrog_N_2tmgF08 (F:33-163)
2c: PFAM_ELFV_dehydrog_N_2tmgF09 (F:33-163)
2d: PFAM_ELFV_dehydrog_N_2tmgF10 (F:33-163)
2e: PFAM_ELFV_dehydrog_N_2tmgF11 (F:33-163)
2f: PFAM_ELFV_dehydrog_N_2tmgF12 (F:33-163)
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Clan
:
NADP_Rossmann
(1239)
Family
:
ELFV_dehydrog
(13)
Thermotoga maritima
(1)
1a
ELFV_dehydrog-2tmgF01
F:179-411
1b
ELFV_dehydrog-2tmgF02
F:179-411
1c
ELFV_dehydrog-2tmgF03
F:179-411
1d
ELFV_dehydrog-2tmgF04
F:179-411
1e
ELFV_dehydrog-2tmgF05
F:179-411
1f
ELFV_dehydrog-2tmgF06
F:179-411
Clan
:
no clan defined [family: ELFV_dehydrog_N]
(13)
Family
:
ELFV_dehydrog_N
(13)
Thermotoga maritima
(1)
2a
ELFV_dehydrog_N-2tmgF07
F:33-163
2b
ELFV_dehydrog_N-2tmgF08
F:33-163
2c
ELFV_dehydrog_N-2tmgF09
F:33-163
2d
ELFV_dehydrog_N-2tmgF10
F:33-163
2e
ELFV_dehydrog_N-2tmgF11
F:33-163
2f
ELFV_dehydrog_N-2tmgF12
F:33-163
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Asym.Unit (358 KB)
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