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2TGI
Asym. Unit
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Asym.Unit (23 KB)
Biol.Unit 1 (39 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TRANSFORMING GROWTH FACTOR-BETA2: AN UNUSUAL FOLD FOR THE SUPERFAMILY
Authors
:
S. Daopin, D. R. Davies
Date
:
20 Oct 93 (Deposition) - 31 Jan 94 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Growth Factor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Daopin, K. A. Piez, Y. Ogawa, D. R. Davies
Crystal Structure Of Transforming Growth Factor-Beta 2: An Unusual Fold For The Superfamily.
Science V. 257 369 1992
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_072740 (R18C, chain A, )
2: VAR_068934 (P36H, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_072740
R
320
C
TGFB2_HUMAN
Disease
---
A
R
18
C
2
UniProt
VAR_068934
P
338
H
TGFB2_HUMAN
Disease (LDS4)
---
A
P
36
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TGF_BETA_1 (A:33-48)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TGF_BETA_1
PS00250
TGF-beta family signature.
TGFB2_HUMAN
335-350
1
A:33-48
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Exons
(3, 3)
Info
All Exons
Exon 1.6 (A:1-9)
Exon 1.7 (A:9-60)
Exon 1.8b (A:61-112)
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1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8b
4: Boundary 1.8b/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000366930
1a
ENSE00001443014
chr1:
218519577-218520389
813
TGFB2_HUMAN
1-116
116
0
-
-
1.3
ENST00000366930
3
ENSE00001000137
chr1:
218578511-218578674
164
TGFB2_HUMAN
116-170
55
0
-
-
1.4a
ENST00000366930
4a
ENSE00001000141
chr1:
218607424-218607556
133
TGFB2_HUMAN
171-215
45
0
-
-
1.5
ENST00000366930
5
ENSE00001000136
chr1:
218607680-218607790
111
TGFB2_HUMAN
215-252
38
0
-
-
1.6
ENST00000366930
6
ENSE00001000138
chr1:
218609312-218609489
178
TGFB2_HUMAN
252-311
60
1
A:1-9
9
1.7
ENST00000366930
7
ENSE00001000139
chr1:
218610685-218610838
154
TGFB2_HUMAN
311-362
52
1
A:9-60
52
1.8b
ENST00000366930
8b
ENSE00001443012
chr1:
218614546-218617961
3416
TGFB2_HUMAN
363-414
52
1
A:61-112
52
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2tgia_ (A:)
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)
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Folds
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)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Cystine-knot cytokines
(124)
Superfamily
:
Cystine-knot cytokines
(124)
Family
:
Transforming growth factor (TGF)-beta
(41)
Protein domain
:
TGF-beta2
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2tgia_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2tgiA00 (A:1-112)
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)
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)
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)
Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Cystine Knot Cytokines, subunit B
(102)
Homologous Superfamily
:
Cystine-knot cytokines
(102)
Human (Homo sapiens)
(84)
1a
2tgiA00
A:1-112
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_TGF_beta_2tgiA01 (A:12-112)
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Clans
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(
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Organisms
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(
)
Clan
:
Cystine-knot
(56)
Family
:
TGF_beta
(29)
Homo sapiens (Human)
(28)
1a
TGF_beta-2tgiA01
A:12-112
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Chain A
Asymmetric Unit 1
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Asym.Unit (23 KB)
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