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2SCP
Biol. Unit 1
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Asym.Unit (65 KB)
Biol.Unit 1 (60 KB)
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(1)
Title
:
STRUCTURE OF A SARCOPLASMIC CALCIUM-BINDING PROTEIN FROM NEREIS DIVERSICOLOR REFINED AT 2.0 ANGSTROMS RESOLUTION
Authors
:
W. J. Cook, S. Vijay-Kumar
Date
:
22 Aug 91 (Deposition) - 31 Oct 93 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Binding Protein
(Keyword Search:
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Reference
:
S. Vijay-Kumar, W. J. Cook
Structure Of A Sarcoplasmic Calcium-Binding Protein From Nereis Diversicolor Refined At 2. 0 A Resolution.
J. Mol. Biol. V. 224 413 1992
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: EF1 (UNKNOWN)
08: EF2 (UNKNOWN)
09: EF3 (UNKNOWN)
10: EF4 (UNKNOWN)
11: EF5 (UNKNOWN)
12: EF6 (UNKNOWN)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:16 , ASP A:18 , ASP A:20 , ALA A:22 , ASP A:27 , HOH A:193
BINDING SITE FOR RESIDUE CA A 190
02
AC2
SOFTWARE
ASP A:104 , ASN A:106 , ASP A:108 , ASN A:110 , GLU A:115 , HOH A:199
BINDING SITE FOR RESIDUE CA A 191
03
AC3
SOFTWARE
ASP A:138 , ASN A:140 , ASP A:142 , LEU A:144 , GLU A:149 , HOH A:205
BINDING SITE FOR RESIDUE CA A 192
04
AC4
SOFTWARE
ASP B:16 , ASP B:18 , ASP B:20 , ALA B:22 , ASP B:27 , HOH B:196
BINDING SITE FOR RESIDUE CA B 193
05
AC5
SOFTWARE
ASP B:104 , ASN B:106 , ASP B:108 , ASN B:110 , GLU B:115
BINDING SITE FOR RESIDUE CA B 194
06
AC6
SOFTWARE
ASP B:138 , ASN B:140 , ASP B:142 , LEU B:144 , GLU B:149 , HOH B:207
BINDING SITE FOR RESIDUE CA B 195
07
EF1
UNKNOWN
ASP A:16 , PHE A:17 , ASP A:18 , LYS A:19 , ASP A:20 , GLY A:21 , ALA A:22 , ILE A:23 , THR A:24 , ARG A:25 , MET A:26 , ASP A:27
NULL
08
EF2
UNKNOWN
ASP A:104 , THR A:105 , ASN A:106 , GLU A:107 , ASP A:108 , ASN A:109 , ASN A:110 , ILE A:111 , SER A:112 , ARG A:113 , ASP A:114 , GLU A:115
NULL
09
EF3
UNKNOWN
ASP A:138 , THR A:139 , ASN A:140 , ASN A:141 , ASP A:142 , GLY A:143 , LEU A:144 , LEU A:145 , SER A:146 , LEU A:147 , GLU A:148 , GLU A:149
NULL
10
EF4
UNKNOWN
ASP B:16 , PHE B:17 , ASP B:18 , LYS B:19 , ASP B:20 , GLY B:21 , ALA B:22 , ILE B:23 , THR B:24 , ARG B:25 , MET B:26 , ASP B:27
NULL
11
EF5
UNKNOWN
ASP B:104 , THR B:105 , ASN B:106 , GLU B:107 , ASP B:108 , ASN B:109 , ASN B:110 , ILE B:111 , SER B:112 , ARG B:113 , ASP B:114 , GLU B:115
NULL
12
EF6
UNKNOWN
ASP B:138 , THR B:139 , ASN B:140 , ASN B:141 , ASP B:142 , GLY B:143 , LEU B:144 , LEU B:145 , SER B:146 , LEU B:147 , GLU B:148 , GLU B:149
NULL
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:3-38,A:99-126,A:134-160,B:134-16...)
2: EF_HAND_1 (A:16-28,A:104-116,A:138-150,B:138-...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
SCP_HEDDI
3-38
99-126
134-160
6
A:3-38
B:3-38
A:99-126
B:99-126
A:134-160
B:134-160
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
SCP_HEDDI
16-28
104-116
138-150
6
A:16-28
B:16-28
A:104-116
B:104-116
A:138-150
B:138-150
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2scpa_ (A:)
1b: SCOP_d2scpb_ (B:)
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Protein Domains
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)
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Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Sarcoplasmic calcium-binding protein
(3)
Sandworm (Nereis diversicolor) [TaxId: 126592]
(2)
1a
d2scpa_
A:
1b
d2scpb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2scpA00 (A:1-174)
1b: CATH_2scpB00 (B:1-174)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Neanthes diversicolor. Organism_taxid: 6352
(1)
1a
2scpA00
A:1-174
1b
2scpB00
B:1-174
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_EF_hand_3_2scpB01 (B:132-153)
1b: PFAM_EF_hand_3_2scpB02 (B:132-153)
1c: PFAM_EF_hand_3_2scpB03 (B:132-153)
1d: PFAM_EF_hand_3_2scpB04 (B:132-153)
1e: PFAM_EF_hand_3_2scpB05 (B:132-153)
1f: PFAM_EF_hand_3_2scpB06 (B:132-153)
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Clan
:
EF_hand
(270)
Family
:
EF_hand_3
(27)
Hediste diversicolor (Sandworm) (Nereis diversicolor)
(2)
1a
EF_hand_3-2scpB01
B:132-153
1b
EF_hand_3-2scpB02
B:132-153
1c
EF_hand_3-2scpB03
B:132-153
1d
EF_hand_3-2scpB04
B:132-153
1e
EF_hand_3-2scpB05
B:132-153
1f
EF_hand_3-2scpB06
B:132-153
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