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2SBL
Asym. Unit
Info
Asym.Unit (266 KB)
Biol.Unit 1 (133 KB)
Biol.Unit 2 (132 KB)
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(1)
Title
:
THE THREE-DIMENSIONAL STRUCTURE OF AN ARACHIDONIC ACID 15-LIPOXYGENASE
Authors
:
L. M. Amzel, J. C. Boyington
Date
:
22 Jul 93 (Deposition) - 27 Feb 95 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: B (1x)
Biol. Unit 2: A (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. C. Boyington, B. J. Gaffney, L. M. Amzel
The Three-Dimensional Structure Of An Arachidonic Acid 15-Lipoxygenase.
Science V. 260 1482 1993
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
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Label:
No.
Name
Count
Type
Full Name
1
FE
2
Ligand/Ion
FE (III) ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS B:499 , HIS B:504 , HIS B:690 , ASN B:694 , ILE B:839
BINDING SITE FOR RESIDUE FE B 840
2
AC2
SOFTWARE
HIS A:499 , HIS A:504 , HIS A:690 , ASN A:694 , ILE A:839
BINDING SITE FOR RESIDUE FE A 840
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 8)
Info
All PROSITE Patterns/Profiles
1: PLAT (A:16-145,B:16-145)
2: LIPOXYGENASE_3 (A:148-839,B:148-839)
3: LIPOXYGENASE_1 (A:494-508,B:494-508)
4: LIPOXYGENASE_2 (A:521-531,B:521-531)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PLAT
PS50095
PLAT domain profile.
LOX1_SOYBN
16-145
2
A:16-145
B:16-145
2
LIPOXYGENASE_3
PS51393
Lipoxygenase iron-binding catalytic domain profile.
LOX1_SOYBN
148-839
2
A:148-839
B:148-839
3
LIPOXYGENASE_1
PS00711
Lipoxygenases iron-binding region signature 1.
LOX1_SOYBN
494-508
2
A:494-508
B:494-508
4
LIPOXYGENASE_2
PS00081
Lipoxygenases iron-binding region signature 2.
LOX1_SOYBN
521-531
2
A:521-531
B:521-531
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2sbla1 (A:150-839)
1b: SCOP_d2sblb1 (B:150-839)
2a: SCOP_d2sbla2 (A:7-149)
2b: SCOP_d2sblb2 (B:7-149)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Lipoxigenase
(27)
Superfamily
:
Lipoxigenase
(27)
Family
:
Plant lipoxigenases
(25)
Protein domain
:
Lipoxigenase, C-terminal domain
(23)
Soybean (Glycine max), isozyme L1 [TaxId: 3847]
(14)
1a
d2sbla1
A:150-839
1b
d2sblb1
B:150-839
Class
:
All beta proteins
(24004)
Fold
:
Lipase/lipooxygenase domain (PLAT/LH2 domain)
(47)
Superfamily
:
Lipase/lipooxygenase domain (PLAT/LH2 domain)
(47)
Family
:
Lipoxigenase N-terminal domain
(24)
Protein domain
:
Plant lipoxigenase
(23)
Soybean (Glycine max), isozyme L1 [TaxId: 3847]
(14)
2a
d2sbla2
A:7-149
2b
d2sblb2
B:7-149
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CATH Domains
(5, 10)
Info
all CATH domains
1a: CATH_2sblA04 (A:357-490)
1b: CATH_2sblB04 (B:357-490)
2a: CATH_2sblA02 (A:168-267)
2b: CATH_2sblB02 (B:168-267)
3a: CATH_2sblA03 (A:268-356)
3b: CATH_2sblB03 (B:268-356)
4a: CATH_2sblA05 (A:491-837)
4b: CATH_2sblB05 (B:491-835)
5a: CATH_2sblA01 (A:9-167)
5b: CATH_2sblB01 (B:9-167)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
[code=3.10.450.60, no name defined]
(26)
Soybean (Glycine max)
(24)
1a
2sblA04
A:357-490
1b
2sblB04
B:357-490
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Lipoxygenase-1; domain 2
(24)
Homologous Superfamily
:
Lipoxygenase-1; Domain 2
(24)
Soybean (Glycine max)
(24)
2a
2sblA02
A:168-267
2b
2sblB02
B:168-267
Topology
:
Lipoxygenase-1; domain 3
(24)
Homologous Superfamily
:
Lipoxygenase-1; Domain 3
(24)
Soybean (Glycine max)
(24)
3a
2sblA03
A:268-356
3b
2sblB03
B:268-356
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Lipoxygenase-1; domain 5
(26)
Homologous Superfamily
:
Lipoxygenase-1; Domain 5
(26)
Soybean (Glycine max)
(24)
4a
2sblA05
A:491-837
4b
2sblB05
B:491-835
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Lipoxygenase-1
(46)
Homologous Superfamily
:
Lipoxygenase-1
(44)
Soybean (Glycine max)
(24)
5a
2sblA01
A:9-167
5b
2sblB01
B:9-167
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_PLAT_2sblB01 (B:40-144)
1b: PFAM_PLAT_2sblB02 (B:40-144)
2a: PFAM_Lipoxygenase_2sblB03 (B:155-823)
2b: PFAM_Lipoxygenase_2sblB04 (B:155-823)
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)
Clan
:
PLAT
(25)
Family
:
PLAT
(25)
Glycine max (Soybean) (Glycine hispida)
(10)
1a
PLAT-2sblB01
B:40-144
1b
PLAT-2sblB02
B:40-144
Clan
:
no clan defined [family: Lipoxygenase]
(13)
Family
:
Lipoxygenase
(13)
Glycine max (Soybean) (Glycine hispida)
(10)
2a
Lipoxygenase-2sblB03
B:155-823
2b
Lipoxygenase-2sblB04
B:155-823
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Asym.Unit (266 KB)
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