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2ROR
Asym. Unit
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Asym.Unit (799 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE VAV1 SH2 DOMAIN COMPLEXED WITH A TYROSINE-PHOSPHORYLATED PEPTIDE FROM SLP76
Authors
:
M. Tanaka, T. Kasai, S. Koshiba, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
08 Apr 08 (Deposition) - 21 Apr 09 (Release) - 21 Apr 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Keywords
:
Sh2 Domain, Protein-Peptide Complex, Phosphorylated Peptide Recognition, Phosphotyrosine Binding Domain, Signal Transduction, Guanine-Nucleotide Releasing Factor, Metal- Binding, Phorbol-Ester Binding, Phosphoprotein, Proto- Oncogene, Sh3 Domain, Zinc, Zinc-Finger, Signaling Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Kasai, M. Tanaka, S. Koshiba, T. Kigawa, S. Yokoyama
Solution Structure Of The Vav1 Sh2 Domain Complexed With A Tyrosine-Phosphorylated Peptide From Slp76
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: O-PHOSPHOTYROSINE (PTRa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PTR
1
Mod. Amino Acid
O-PHOSPHOTYROSINE
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_051997 (T96M, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051997
T
739
M
VAV_HUMAN
Polymorphism
36097961
A
T
96
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: SH3 (A:7-18|-)
2: SH2 (A:28-122)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH3
PS50002
Src homology 3 (SH3) domain profile.
VAV_HUMAN
617-660
782-842
1
A:7-18
-
2
SH2
PS50001
Src homology 2 (SH2) domain profile.
VAV_HUMAN
671-765
1
A:28-122
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Exons
(1, 1)
Info
All Exons
Exon 1.7a (B:1-15)
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All Exon Boundaries
1: Boundary 1.6a/1.7a
2: Boundary 1.7a/1.8
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000046794
1a
ENSE00002138597
chr5:
169725231-169724538
694
LCP2_HUMAN
1-26
26
0
-
-
1.2
ENST00000046794
2
ENSE00000769343
chr5:
169720376-169720314
63
LCP2_HUMAN
27-47
21
0
-
-
1.3a
ENST00000046794
3a
ENSE00000769339
chr5:
169715020-169714974
47
LCP2_HUMAN
48-63
16
0
-
-
1.4a
ENST00000046794
4a
ENSE00000769324
chr5:
169702864-169702799
66
LCP2_HUMAN
63-85
23
0
-
-
1.5
ENST00000046794
5
ENSE00000769295
chr5:
169702355-169702324
32
LCP2_HUMAN
85-96
12
0
-
-
1.6a
ENST00000046794
6a
ENSE00000769292
chr5:
169701342-169701305
38
LCP2_HUMAN
96-108
13
0
-
-
1.7a
ENST00000046794
7a
ENSE00000769288
chr5:
169697921-169697723
199
LCP2_HUMAN
109-175
67
1
B:1-15
15
1.8
ENST00000046794
8
ENSE00000769287
chr5:
169695486-169695389
98
LCP2_HUMAN
175-207
33
0
-
-
1.9c
ENST00000046794
9c
ENSE00000769283
chr5:
169694079-169694013
67
LCP2_HUMAN
208-230
23
0
-
-
1.10
ENST00000046794
10
ENSE00000769281
chr5:
169693895-169693812
84
LCP2_HUMAN
230-258
29
0
-
-
1.11
ENST00000046794
11
ENSE00001026289
chr5:
169689996-169689971
26
LCP2_HUMAN
258-266
9
0
-
-
1.12
ENST00000046794
12
ENSE00001026292
chr5:
169689865-169689846
20
LCP2_HUMAN
267-273
7
0
-
-
1.13
ENST00000046794
13
ENSE00000812801
chr5:
169689746-169689639
108
LCP2_HUMAN
273-309
37
0
-
-
1.14
ENST00000046794
14
ENSE00000812800
chr5:
169688141-169688111
31
LCP2_HUMAN
309-319
11
0
-
-
1.15
ENST00000046794
15
ENSE00001632768
chr5:
169685882-169685870
13
LCP2_HUMAN
320-324
5
0
-
-
1.16b
ENST00000046794
16b
ENSE00000769273
chr5:
169685170-169685041
130
LCP2_HUMAN
324-367
44
0
-
-
1.17b
ENST00000046794
17b
ENSE00000769269
chr5:
169683579-169683530
50
LCP2_HUMAN
367-384
18
0
-
-
1.18
ENST00000046794
18
ENSE00000812799
chr5:
169680217-169680123
95
LCP2_HUMAN
384-415
32
0
-
-
1.19
ENST00000046794
19
ENSE00000769265
chr5:
169679515-169679438
78
LCP2_HUMAN
416-441
26
0
-
-
1.20b
ENST00000046794
20b
ENSE00000609392
chr5:
169677889-169677734
156
LCP2_HUMAN
442-493
52
0
-
-
1.21c
ENST00000046794
21c
ENSE00002100375
chr5:
169675823-169673241
2583
LCP2_HUMAN
494-533
40
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SH2_2rorA01 (A:28-102)
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Clans
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Clan
:
no clan defined [family: SH2]
(119)
Family
:
SH2
(119)
Homo sapiens (Human)
(79)
1a
SH2-2rorA01
A:28-102
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Asym.Unit (799 KB)
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