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2ROP
Asym. Unit
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Asym.Unit (714 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF DOMAINS 3 AND 4 OF HUMAN ATP7B
Authors
:
L. Banci, I. Bertini, F. Cantini, A. C. Rosenzweig, L. A. Yatsunyk
Date
:
04 Apr 08 (Deposition) - 21 Oct 08 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Nmr, Wilson Protein, Mobility, Protein-Protein Interaction, Alternative Splicing, Atp-Binding, Copper, Copper Transport, Cytoplasm, Disease Mutation, Golgi Apparatus, Hydrolase, Ion Transport, Magnesium, Membrane, Metal-Binding, Mitochondrion, Nucleotide-Binding, Phosphoprotein, Polymorphism, Transmembrane, Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Banci, I. Bertini, F. Cantini, A. C. Rosenzweig, L. A. Yatsunyk
Metal Binding Domains 3 And 4 Of The Wilson Disease Protein: Solution Structure And Interaction With The Copper(I) Chaperone Hah1
Biochemistry V. 47 7423 2008
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_044453 (V53L, chain A, )
2: VAR_000705 (I153V, chain A, )
3: VAR_000706 (A169A, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_044453
V
290
L
ATP7B_HUMAN
Polymorphism
---
A
V
53
L
2
UniProt
VAR_000705
I
390
V
ATP7B_HUMAN
Polymorphism
---
A
I
153
V
3
UniProt
VAR_000706
S
406
A
ATP7B_HUMAN
Polymorphism
1801243
A
A
169
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: HMA_2 (-|-|A:21-90|A:123-189|-|-)
2: HMA_1 (-|-|A:26-55|A:128-157|-|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HMA_2
PS50846
Heavy-metal-associated domain profile.
ATP7B_HUMAN
59-125
144-210
258-327
360-426
489-555
565-631
2
-
-
A:21-90
A:123-189
-
-
2
HMA_1
PS01047
Heavy-metal-associated domain.
ATP7B_HUMAN
64-93
149-178
263-292
365-394
494-523
570-599
2
-
-
A:26-55
A:128-157
-
-
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Exons
(1, 1)
Info
All Exons
Exon 1.5b (A:20-190 (gaps))
View:
Select:
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All Exon Boundaries
1: Boundary 1.1/1.5b
2: Boundary 1.5b/1.6
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000242839
1
ENSE00002179667
chr13:
52585630-52585423
208
ATP7B_HUMAN
1-17
17
0
-
-
1.5b
ENST00000242839
5b
ENSE00001793840
chr13:
52549304-52548071
1234
ATP7B_HUMAN
18-429
412
1
A:20-190 (gaps)
171
1.6
ENST00000242839
6
ENSE00001750372
chr13:
52544885-52544628
258
ATP7B_HUMAN
429-515
87
0
-
-
1.7
ENST00000242839
7
ENSE00001626066
chr13:
52542743-52542580
164
ATP7B_HUMAN
515-569
55
0
-
-
1.8a
ENST00000242839
8a
ENSE00001663793
chr13:
52539169-52539008
162
ATP7B_HUMAN
570-623
54
0
-
-
1.9
ENST00000242839
9
ENSE00001778246
chr13:
52536049-52535973
77
ATP7B_HUMAN
624-649
26
0
-
-
1.10
ENST00000242839
10
ENSE00001797943
chr13:
52534458-52534284
175
ATP7B_HUMAN
649-707
59
0
-
-
1.11
ENST00000242839
11
ENSE00001661412
chr13:
52532680-52532447
234
ATP7B_HUMAN
708-785
78
0
-
-
1.12
ENST00000242839
12
ENSE00001780518
chr13:
52531743-52531652
92
ATP7B_HUMAN
786-816
31
0
-
-
1.13
ENST00000242839
13
ENSE00001691729
chr13:
52524535-52524408
128
ATP7B_HUMAN
816-859
44
0
-
-
1.14
ENST00000242839
14
ENSE00001628540
chr13:
52524297-52524143
155
ATP7B_HUMAN
859-910
52
0
-
-
1.15
ENST00000242839
15
ENSE00001610847
chr13:
52523932-52523798
135
ATP7B_HUMAN
911-955
45
0
-
-
1.16b
ENST00000242839
16b
ENSE00001682155
chr13:
52520614-52520420
195
ATP7B_HUMAN
956-1020
65
0
-
-
1.17
ENST00000242839
17
ENSE00001721174
chr13:
52518427-52518245
183
ATP7B_HUMAN
1021-1081
61
0
-
-
1.18
ENST00000242839
18
ENSE00001706162
chr13:
52516690-52516522
169
ATP7B_HUMAN
1082-1138
57
0
-
-
1.19a
ENST00000242839
19a
ENSE00001770820
chr13:
52515360-52515217
144
ATP7B_HUMAN
1138-1186
49
0
-
-
1.20
ENST00000242839
20
ENSE00001687534
chr13:
52513329-52513187
143
ATP7B_HUMAN
1186-1233
48
0
-
-
1.21
ENST00000242839
21
ENSE00001595712
chr13:
52511815-52511612
204
ATP7B_HUMAN
1234-1301
68
0
-
-
1.22
ENST00000242839
22
ENSE00001612752
chr13:
52511529-52511412
118
ATP7B_HUMAN
1302-1341
40
0
-
-
1.23
ENST00000242839
23
ENSE00001665491
chr13:
52509831-52509729
103
ATP7B_HUMAN
1341-1375
35
0
-
-
1.24b
ENST00000242839
24b
ENSE00001813320
chr13:
52509165-52506809
2357
ATP7B_HUMAN
1375-1465
91
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ropa1 (A:20-81)
1b: SCOP_d2ropa2 (A:128-190)
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(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
HMA, heavy metal-associated domain
(79)
Family
:
automated matches
(20)
Protein domain
:
automated matches
(20)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d2ropa1
A:20-81
1b
d2ropa2
A:128-190
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_HMA_2ropA01 (A:125-186)
1b: PFAM_HMA_2ropA02 (A:125-186)
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Clans
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(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: HMA]
(41)
Family
:
HMA
(41)
Homo sapiens (Human)
(14)
1a
HMA-2ropA01
A:125-186
1b
HMA-2ropA02
A:125-186
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Chain A
Asymmetric Unit 1
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Asym.Unit (714 KB)
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