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2RMA
Asym. Unit
Info
Asym.Unit (373 KB)
Biol.Unit 1 (362 KB)
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(1)
Title
:
CRYSTAL STRUCTURES OF CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN A AND N-METHYL-4-[(E)-2-BUTENYL]-4,4-DIMETHYLTHREONINE CYCLOSPORIN A
Authors
:
H. Ke, D. Mayrose
Date
:
07 Jan 94 (Deposition) - 07 Feb 95 (Release) - 27 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T (1x)
Keywords
:
Isomerase-Immunosuppressant Complex, Cyclophilin-Cyclosporin Complex, Cyclosporin A, Immunosuppressant, Cyclophilin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ke, D. Mayrose, P. J. Belshaw, D. G. Alberg, S. L. Schreiber, Z. Y. Chang, F. A. Etzkorn, S. Ho, C. T. Walsh
Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4, 4-Dimethylthreonine Cyclospori A.
Structure V. 2 33 1994
[
close entry info
]
Hetero Components
(6, 90)
Info
All Hetero Components
1a: ALPHA-AMINOBUTYRIC ACID (ABAa)
1b: ALPHA-AMINOBUTYRIC ACID (ABAb)
1c: ALPHA-AMINOBUTYRIC ACID (ABAc)
1d: ALPHA-AMINOBUTYRIC ACID (ABAd)
1e: ALPHA-AMINOBUTYRIC ACID (ABAe)
1f: ALPHA-AMINOBUTYRIC ACID (ABAf)
1g: ALPHA-AMINOBUTYRIC ACID (ABAg)
1h: ALPHA-AMINOBUTYRIC ACID (ABAh)
1i: ALPHA-AMINOBUTYRIC ACID (ABAi)
1j: ALPHA-AMINOBUTYRIC ACID (ABAj)
2a: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTa)
2b: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTb)
2c: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTc)
2d: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTd)
2e: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTe)
2f: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTf)
2g: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTg)
2h: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTh)
2i: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTi)
2j: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTj)
3a: D-ALANINE (DALa)
3b: D-ALANINE (DALb)
3c: D-ALANINE (DALc)
3d: D-ALANINE (DALd)
3e: D-ALANINE (DALe)
3f: D-ALANINE (DALf)
3g: D-ALANINE (DALg)
3h: D-ALANINE (DALh)
3i: D-ALANINE (DALi)
3j: D-ALANINE (DALj)
4a: N-METHYLLEUCINE (MLEa)
4aa: N-METHYLLEUCINE (MLEaa)
4ab: N-METHYLLEUCINE (MLEab)
4ac: N-METHYLLEUCINE (MLEac)
4ad: N-METHYLLEUCINE (MLEad)
4ae: N-METHYLLEUCINE (MLEae)
4af: N-METHYLLEUCINE (MLEaf)
4ag: N-METHYLLEUCINE (MLEag)
4ah: N-METHYLLEUCINE (MLEah)
4ai: N-METHYLLEUCINE (MLEai)
4aj: N-METHYLLEUCINE (MLEaj)
4ak: N-METHYLLEUCINE (MLEak)
4al: N-METHYLLEUCINE (MLEal)
4am: N-METHYLLEUCINE (MLEam)
4an: N-METHYLLEUCINE (MLEan)
4b: N-METHYLLEUCINE (MLEb)
4c: N-METHYLLEUCINE (MLEc)
4d: N-METHYLLEUCINE (MLEd)
4e: N-METHYLLEUCINE (MLEe)
4f: N-METHYLLEUCINE (MLEf)
4g: N-METHYLLEUCINE (MLEg)
4h: N-METHYLLEUCINE (MLEh)
4i: N-METHYLLEUCINE (MLEi)
4j: N-METHYLLEUCINE (MLEj)
4k: N-METHYLLEUCINE (MLEk)
4l: N-METHYLLEUCINE (MLEl)
4m: N-METHYLLEUCINE (MLEm)
4n: N-METHYLLEUCINE (MLEn)
4o: N-METHYLLEUCINE (MLEo)
4p: N-METHYLLEUCINE (MLEp)
4q: N-METHYLLEUCINE (MLEq)
4r: N-METHYLLEUCINE (MLEr)
4s: N-METHYLLEUCINE (MLEs)
4t: N-METHYLLEUCINE (MLEt)
4u: N-METHYLLEUCINE (MLEu)
4v: N-METHYLLEUCINE (MLEv)
4w: N-METHYLLEUCINE (MLEw)
4x: N-METHYLLEUCINE (MLEx)
4y: N-METHYLLEUCINE (MLEy)
4z: N-METHYLLEUCINE (MLEz)
5a: N-METHYLVALINE (MVAa)
5b: N-METHYLVALINE (MVAb)
5c: N-METHYLVALINE (MVAc)
5d: N-METHYLVALINE (MVAd)
5e: N-METHYLVALINE (MVAe)
5f: N-METHYLVALINE (MVAf)
5g: N-METHYLVALINE (MVAg)
5h: N-METHYLVALINE (MVAh)
5i: N-METHYLVALINE (MVAi)
5j: N-METHYLVALINE (MVAj)
6a: SARCOSINE (SARa)
6b: SARCOSINE (SARb)
6c: SARCOSINE (SARc)
6d: SARCOSINE (SARd)
6e: SARCOSINE (SARe)
6f: SARCOSINE (SARf)
6g: SARCOSINE (SARg)
6h: SARCOSINE (SARh)
6i: SARCOSINE (SARi)
6j: SARCOSINE (SARj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ABA
10
Mod. Amino Acid
ALPHA-AMINOBUTYRIC ACID
2
BMT
10
Mod. Amino Acid
4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE
3
DAL
10
Mod. Amino Acid
D-ALANINE
4
MLE
40
Mod. Amino Acid
N-METHYLLEUCINE
5
MVA
10
Mod. Amino Acid
N-METHYLVALINE
6
SAR
10
Mod. Amino Acid
SARCOSINE
[
close Hetero Component info
]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:55 , PHE A:60 , GLN A:63 , GLY A:72 , ASN A:102 , ALA A:103 , GLN A:111 , PHE A:113 , TRP A:121 , LEU A:122 , HIS A:126 , ARG A:148 , HOH A:2016 , PRO I:30 , LYS I:31 , TYR I:79 , THR K:73 , GLU K:81 , ALA K:103 , ABA L:6 , SAR L:7 , MLE L:8
BINDING SITE FOR CHAIN B OF CYCLOSPORIN A
02
AC2
SOFTWARE
LYS A:31 , TYR A:79 , ARG C:55 , PHE C:60 , GLN C:63 , GLY C:72 , ASN C:102 , ALA C:103 , GLN C:111 , PHE C:113 , TRP C:121 , LEU C:122 , HIS C:126 , HOH D:2001 , THR M:73 , GLU M:81 , ALA M:103 , HOH M:2014 , ABA N:6 , SAR N:7 , MLE N:8
BINDING SITE FOR CHAIN D OF CYCLOSPORIN A
03
AC3
SOFTWARE
LYS C:31 , TYR C:79 , ARG E:55 , PHE E:60 , GLN E:63 , GLY E:72 , ASN E:102 , GLN E:111 , PHE E:113 , TRP E:121 , HIS E:126 , HOH E:2011 , HOH F:2001 , HOH F:2002 , THR O:73 , GLU O:81 , ALA O:103 , ABA P:6 , SAR P:7 , MLE P:8
BINDING SITE FOR CHAIN F OF CYCLOSPORIN A
04
AC4
SOFTWARE
LYS E:31 , TYR E:79 , ARG G:55 , PHE G:60 , GLN G:63 , GLY G:72 , ASN G:102 , ALA G:103 , PHE G:113 , TRP G:121 , LEU G:122 , HIS G:126 , HOH H:2001 , THR Q:73 , GLU Q:81 , ALA Q:103 , ABA R:6 , SAR R:7 , MLE R:8
BINDING SITE FOR CHAIN H OF CYCLOSPORIN A
05
AC5
SOFTWARE
PRO G:30 , TYR G:79 , ARG I:55 , PHE I:60 , GLN I:63 , GLY I:72 , ALA I:101 , ASN I:102 , ALA I:103 , GLN I:111 , PHE I:113 , TRP I:121 , HIS I:126 , HOH J:2001 , HOH J:2002 , HOH J:2003 , THR S:73 , GLU S:81 , ALA S:103 , HOH S:2027 , ABA T:6 , SAR T:7 , MLE T:8
BINDING SITE FOR CHAIN J OF CYCLOSPORIN A
06
AC6
SOFTWARE
THR A:73 , GLU A:81 , ALA A:103 , ABA B:6 , SAR B:7 , MLE B:8 , ARG K:55 , PHE K:60 , GLN K:63 , GLY K:72 , ALA K:101 , ASN K:102 , ALA K:103 , PHE K:113 , TRP K:121 , LEU K:122 , HIS K:126 , HOH L:2001 , LYS M:31 , TYR M:79
BINDING SITE FOR CHAIN L OF CYCLOSPORIN A
07
AC7
SOFTWARE
THR C:73 , GLU C:81 , ALA C:103 , HOH C:2024 , ABA D:6 , SAR D:7 , MLE D:8 , ARG M:55 , PHE M:60 , GLN M:63 , GLY M:72 , ALA M:101 , ASN M:102 , ALA M:103 , GLN M:111 , PHE M:113 , TRP M:121 , LEU M:122 , HIS M:126 , HOH N:2001 , MET O:1 , TYR O:79 , HOH O:2005
BINDING SITE FOR CHAIN N OF CYCLOSPORIN A
08
AC8
SOFTWARE
THR E:73 , GLU E:81 , ALA E:103 , ABA F:6 , SAR F:7 , MLE F:8 , ARG O:55 , PHE O:60 , GLN O:63 , GLY O:72 , ALA O:101 , ASN O:102 , ALA O:103 , GLN O:111 , PHE O:113 , TRP O:121 , HIS O:126 , HOH O:2015 , HOH O:2016 , HOH P:2001 , HOH P:2002 , MET Q:1 , PRO Q:30 , LYS Q:31 , TYR Q:79
BINDING SITE FOR CHAIN P OF CYCLOSPORIN A
09
AC9
SOFTWARE
THR G:73 , GLU G:81 , ALA G:103 , HOH G:2027 , ABA H:6 , SAR H:7 , MLE H:8 , ARG Q:55 , PHE Q:60 , GLN Q:63 , GLY Q:72 , ALA Q:101 , ASN Q:102 , ALA Q:103 , GLN Q:111 , PHE Q:113 , TRP Q:121 , LEU Q:122 , HIS Q:126 , HOH R:2001 , HOH R:2002 , LYS S:31 , TYR S:79
BINDING SITE FOR CHAIN R OF CYCLOSPORIN A
10
BC1
SOFTWARE
THR I:73 , GLU I:81 , ALA I:103 , ABA J:6 , SAR J:7 , MLE J:8 , LYS K:31 , TYR K:79 , ARG S:55 , PHE S:60 , GLN S:63 , GLY S:72 , ASN S:102 , ALA S:103 , GLN S:111 , PHE S:113 , TRP S:121 , LEU S:122 , HIS S:126 , HOH S:2021 , HOH T:2001 , HOH T:2002 , HOH T:2003
BINDING SITE FOR CHAIN T OF CYCLOSPORIN A
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 20)
Info
All PROSITE Patterns/Profiles
1: CSA_PPIASE_2 (A:7-163,C:7-163,E:7-163,G:7-163,I:...)
2: CSA_PPIASE_1 (A:48-65,C:48-65,E:48-65,G:48-65,I:...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CSA_PPIASE_2
PS50072
Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.
PPIA_HUMAN
7-163
10
A:7-163
C:7-163
E:7-163
G:7-163
I:7-163
K:7-163
M:7-163
O:7-163
Q:7-163
S:7-163
2
CSA_PPIASE_1
PS00170
Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.
PPIA_HUMAN
48-65
10
A:48-65
C:48-65
E:48-65
G:48-65
I:48-65
K:48-65
M:48-65
O:48-65
Q:48-65
S:48-65
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d2rmaa_ (A:)
1b: SCOP_d2rmac_ (C:)
1c: SCOP_d2rmae_ (E:)
1d: SCOP_d2rmag_ (G:)
1e: SCOP_d2rmai_ (I:)
1f: SCOP_d2rmak_ (K:)
1g: SCOP_d2rmam_ (M:)
1h: SCOP_d2rmao_ (O:)
1i: SCOP_d2rmaq_ (Q:)
1j: SCOP_d2rmas_ (S:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cyclophilin-like
(169)
Superfamily
:
Cyclophilin-like
(169)
Family
:
Cyclophilin (peptidylprolyl isomerase)
(160)
Protein domain
:
Cyclophilin (eukaryotic)
(77)
Human (Homo sapiens), variant A [TaxId: 9606]
(58)
1a
d2rmaa_
A:
1b
d2rmac_
C:
1c
d2rmae_
E:
1d
d2rmag_
G:
1e
d2rmai_
I:
1f
d2rmak_
K:
1g
d2rmam_
M:
1h
d2rmao_
O:
1i
d2rmaq_
Q:
1j
d2rmas_
S:
[
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]
CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_2rmaA00 (A:1-165)
1b: CATH_2rmaC00 (C:1-165)
1c: CATH_2rmaE00 (E:1-165)
1d: CATH_2rmaG00 (G:1-165)
1e: CATH_2rmaI00 (I:1-165)
1f: CATH_2rmaK00 (K:1-165)
1g: CATH_2rmaM00 (M:1-165)
1h: CATH_2rmaO00 (O:1-165)
1i: CATH_2rmaQ00 (Q:1-165)
1j: CATH_2rmaS00 (S:1-165)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Cyclophilin
(95)
Homologous Superfamily
:
Cyclophilin
(95)
Homo sapiens.
(2)
1a
2rmaA00
A:1-165
1b
2rmaC00
C:1-165
1c
2rmaE00
E:1-165
1d
2rmaG00
G:1-165
1e
2rmaI00
I:1-165
1f
2rmaK00
K:1-165
1g
2rmaM00
M:1-165
1h
2rmaO00
O:1-165
1i
2rmaQ00
Q:1-165
1j
2rmaS00
S:1-165
[
close CATH info
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Pfam Domains
(1, 10)
Info
all PFAM domains
1a: PFAM_Pro_isomerase_2rmaS01 (S:7-163)
1b: PFAM_Pro_isomerase_2rmaS02 (S:7-163)
1c: PFAM_Pro_isomerase_2rmaS03 (S:7-163)
1d: PFAM_Pro_isomerase_2rmaS04 (S:7-163)
1e: PFAM_Pro_isomerase_2rmaS05 (S:7-163)
1f: PFAM_Pro_isomerase_2rmaS06 (S:7-163)
1g: PFAM_Pro_isomerase_2rmaS07 (S:7-163)
1h: PFAM_Pro_isomerase_2rmaS08 (S:7-163)
1i: PFAM_Pro_isomerase_2rmaS09 (S:7-163)
1j: PFAM_Pro_isomerase_2rmaS10 (S:7-163)
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Clan
:
Cyclophil-like
(65)
Family
:
Pro_isomerase
(53)
Homo sapiens (Human)
(42)
1a
Pro_isomerase-2rmaS01
S:7-163
1b
Pro_isomerase-2rmaS02
S:7-163
1c
Pro_isomerase-2rmaS03
S:7-163
1d
Pro_isomerase-2rmaS04
S:7-163
1e
Pro_isomerase-2rmaS05
S:7-163
1f
Pro_isomerase-2rmaS06
S:7-163
1g
Pro_isomerase-2rmaS07
S:7-163
1h
Pro_isomerase-2rmaS08
S:7-163
1i
Pro_isomerase-2rmaS09
S:7-163
1j
Pro_isomerase-2rmaS10
S:7-163
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