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Getting 'Exon' information from database.
2RLP
Asym. Unit
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Asym.Unit (943 KB)
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Models
(30 )
Title
:
NMR STRUCTURE OF CCP MODULES 1-2 OF COMPLEMENT FACTOR H
Authors
:
H. G. Hocking, A. P. Herbert, M. K. Pangburn, D. Kavanagh, P. N. Barlow, D. Uhrin
Date
:
28 Jul 07 (Deposition) - 19 Feb 08 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (30 x)
Keywords
:
Complement, Factor H, Age-Related Macular Degeneration, Immune System, Nmr, Cofactor Activity, Alternative Splicing, Complement Alternate Pathway, Disease Mutation, Glycoprotein, Immune Response, Innate Immunity, Polymorphism, Secreted, Sushi
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. G. Hocking, A. P. Herbert, D. Kavanagh, D. C. Soares, V. P. Ferreira, M. K. Pangburn, D. Uhrin, P. N. Barlow
Structure Of The N-Terminal Region Of Complement Factor H And Conformational Implications Of Disease-Linked Sequence Variations.
J. Biol. Chem. V. 283 9475 2008
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
[
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_023836 (V62I, chain A, )
2: VAR_025864 (R78G, chain A, )
3: VAR_031978 (R127L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_023836
V
62
I
CFAH_HUMAN
Polymorphism
800292
A
V
62
I
2
UniProt
VAR_025864
R
78
G
CFAH_HUMAN
Disease (AHUS1)
---
A
R
78
G
3
UniProt
VAR_031978
R
127
L
CFAH_HUMAN
Disease (CFHD)
---
A
R
127
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SUSHI (-|A:83-142|-|-|-|-|-|-|-|-|-|-|-|-...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
CFAH_HUMAN
19-82
83-143
144-207
208-264
265-322
387-444
446-507
515-566
567-625
628-686
689-746
751-805
809-866
868-928
929-986
987-1045
1046-1104
1107-1165
1194-1230
1
-
A:83-142
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
[
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]
Exons
(4, 4)
Info
All Exons
Exon 1.1a (A:20-20)
Exon 1.2a (A:20-82)
Exon 1.3 (A:82-117)
Exon 1.4 (A:117-142)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2a
3: Boundary 1.2a/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000367429
1a
ENSE00001444484
chr1:
196621008-196621305
298
CFAH_HUMAN
1-20
20
1
A:20-20
1
1.2a
ENST00000367429
2a
ENSE00001134426
chr1:
196642108-196642293
186
CFAH_HUMAN
20-82
63
1
A:20-82
63
1.3
ENST00000367429
3
ENSE00000791013
chr1:
196642987-196643092
106
CFAH_HUMAN
82-117
36
1
A:82-117
36
1.4
ENST00000367429
4
ENSE00000791014
chr1:
196645119-196645195
77
CFAH_HUMAN
117-143
27
1
A:117-142
26
1.5b
ENST00000367429
5b
ENSE00000469039
chr1:
196646606-196646797
192
CFAH_HUMAN
143-207
65
0
-
-
1.5c
ENST00000367429
5c
ENSE00000791016
chr1:
196648753-196648923
171
CFAH_HUMAN
207-264
58
0
-
-
1.6
ENST00000367429
6
ENSE00000469041
chr1:
196654194-196654367
174
CFAH_HUMAN
264-322
59
0
-
-
1.7
ENST00000367429
7
ENSE00001769047
chr1:
196658550-196658744
195
CFAH_HUMAN
322-387
66
0
-
-
1.8a
ENST00000367429
8a
ENSE00001597868
chr1:
196659193-196659369
177
CFAH_HUMAN
387-446
60
0
-
-
1.12
ENST00000367429
12
ENSE00000469044
chr1:
196682865-196683047
183
CFAH_HUMAN
446-507
62
0
-
-
1.13
ENST00000367429
13
ENSE00000469045
chr1:
196684723-196684899
177
CFAH_HUMAN
507-566
60
0
-
-
1.14
ENST00000367429
14
ENSE00000791022
chr1:
196694251-196694427
177
CFAH_HUMAN
566-625
60
0
-
-
1.15
ENST00000367429
15
ENSE00000791023
chr1:
196695600-196695782
183
CFAH_HUMAN
625-686
62
0
-
-
1.16
ENST00000367429
16
ENSE00000469048
chr1:
196695891-196696070
180
CFAH_HUMAN
686-746
61
0
-
-
1.17
ENST00000367429
17
ENSE00000791025
chr1:
196697476-196697652
177
CFAH_HUMAN
746-805
60
0
-
-
1.18a
ENST00000367429
18a
ENSE00000791026
chr1:
196705954-196706136
183
CFAH_HUMAN
805-866
62
0
-
-
1.19
ENST00000367429
19
ENSE00000791027
chr1:
196706605-196706790
186
CFAH_HUMAN
866-928
63
0
-
-
1.20a
ENST00000367429
20a
ENSE00000791028
chr1:
196709749-196709922
174
CFAH_HUMAN
928-986
59
0
-
-
1.20d
ENST00000367429
20d
ENSE00000469053
chr1:
196711005-196711181
177
CFAH_HUMAN
986-1045
60
0
-
-
1.21
ENST00000367429
21
ENSE00001622338
chr1:
196712582-196712758
177
CFAH_HUMAN
1045-1104
60
0
-
-
1.22
ENST00000367429
22
ENSE00001719380
chr1:
196714947-196715129
183
CFAH_HUMAN
1104-1165
62
0
-
-
1.23
ENST00000367429
23
ENSE00001931000
chr1:
196716241-196716634
394
CFAH_HUMAN
1165-1231
67
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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