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2RLI
Asym. Unit
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Asym.Unit (1.6 MB)
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Models
(31 )
Title
:
SOLUTION STRUCTURE OF CU(I) HUMAN SCO2
Authors
:
L. Banci, I. Bertini, S. Ciofi-Baffoni, I. P. Gerothanassis, I. Leontari, M. Martinelli, S. Wang, Structural Proteomics In Europe (Spine)
Date
:
11 Jul 07 (Deposition) - 28 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (31 x)
Keywords
:
Copper Protein, Thioredoxin Fold, Metal Transport, Structural Genomics, Spine2-Complexes, Structural Proteomics In Europe, Spine
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Banci, I. Bertini, S. Ciofi-Baffoni, I. P. Gerothanassis, I. Leontari, M. Martinelli, S. Wang
A Structural Characterization Of Human Sco2
Structure V. 15 1132 2007
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: COPPER (I) ION (CU1a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU1
1
Ligand/Ion
COPPER (I) ION
[
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:133 , ILE A:136 , CYS A:137 , HIS A:224
BINDING SITE FOR RESIDUE CU1 A 267
[
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_070053 (R114H, chain A, )
2: VAR_070054 (C133Y, chain A, )
3: VAR_008874 (E140K, chain A, )
4: VAR_013238 (R171W, chain A, )
5: VAR_008875 (S225F, chain A, )
6: VAR_051912 (A259V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_070053
R
114
H
SCO2_HUMAN
Disease (MYP6)
---
A
R
114
H
2
UniProt
VAR_070054
C
133
Y
SCO2_HUMAN
Disease (CEMCOX1)
---
A
C
133
Y
3
UniProt
VAR_008874
E
140
K
SCO2_HUMAN
Disease (MYP6)
---
A
E
140
K
4
UniProt
VAR_013238
R
171
W
SCO2_HUMAN
Disease (CEMCOX1)
28937598
A
R
171
W
5
UniProt
VAR_008875
S
225
F
SCO2_HUMAN
Disease (CEMCOX1)
---
A
S
225
F
6
UniProt
VAR_051912
A
259
V
SCO2_HUMAN
Disease (MYP6)
8139305
A
A
259
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(1, 1)
Info
All Exons
Exon 1.4c (A:97-266)
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All Exon Boundaries
1: Boundary 1.3a/1.4c
2: Boundary 1.4c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000395693
3a
ENSE00001522509
chr22:
50964035-50963901
135
SCO2_HUMAN
-
0
0
-
-
1.4c
ENST00000395693
4c
ENSE00001522507
chr22:
50962853-50961997
857
SCO2_HUMAN
1-271
271
1
A:97-266
170
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2rlia_ (A:)
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(
)
(
)
Folds
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)
(
)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Human (Homo sapiens) [TaxId: 9606]
(87)
1a
d2rlia_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2rliA00 (A:97-266)
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(
)
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)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
2rliA00
A:97-266
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SCO1_SenC_2rliA01 (A:100-245)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Thioredoxin
(367)
Family
:
SCO1-SenC
(7)
Homo sapiens (Human)
(2)
1a
SCO1-SenC-2rliA01
A:100-245
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Chain A
Asymmetric Unit 1
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