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2RKY
Biol. Unit 2
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Asym.Unit (47 KB)
Biol.Unit 1 (23 KB)
Biol.Unit 2 (22 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FOURTH AND FIFTH FIBRONECTIN F1 MODULES IN COMPLEX WITH A FRAGMENT OF STAPHYLOCOCCUS AUREUS FNBPA-1
Authors
:
R. J. Bingham
Date
:
18 Oct 07 (Deposition) - 05 Aug 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Fibronectin, 4F15F1, Beta Zipper, Staphylococcus Aureus, Acute Phase, Alternative Splicing, Cell Adhesion, Extracellular Matrix, Glycoprotein, Heparin-Binding, Phosphorylation, Pyrrolidone Carboxylic Acid, Secreted, Sulfation, Cell Wall, Peptidoglycan-Anchor, Virulence
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. J. Bingham, N. A. Meenan, U. Schwarz-Linek, J. P. Turkenburg, E. F. Garman, J. R. Potts
Crystal Structures Of Fibronectin-Binding Sites From Staphylococcus Aureus Fnbpa In Complex With Fibronectin Domains
Proc. Natl. Acad. Sci. Usa V. 105 12254 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
2a: THIOCYANATE ION (SCNa)
2b: THIOCYANATE ION (SCNb)
2c: THIOCYANATE ION (SCNc)
2d: THIOCYANATE ION (SCNd)
2e: THIOCYANATE ION (SCNe)
View:
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No.
Name
Count
Type
Full Name
1
K
-1
Ligand/Ion
POTASSIUM ION
2
SCN
3
Ligand/Ion
THIOCYANATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:175 , GLY A:176 , HOH A:255 , ASN C:220 , ARG C:221
BINDING SITE FOR RESIDUE SCN A 1
2
AC2
SOFTWARE
ASP A:219 , ASN A:220 , HOH A:261 , HOH A:289 , HOH A:354 , GLN C:175 , MET C:178 , GLN D:516
BINDING SITE FOR RESIDUE SCN A 245
3
AC3
SOFTWARE
GLU C:153 , LYS C:154 , GLY C:186 , GLY C:190 , SCN C:246
BINDING SITE FOR RESIDUE K C 1
4
AC4
SOFTWARE
ASN A:220 , ARG A:221 , HOH A:251 , GLN C:175 , GLY C:176
BINDING SITE FOR RESIDUE SCN C 245
5
AC5
SOFTWARE
ALA A:152 , GLU A:153 , LYS A:154 , K C:1 , GLU C:153 , LYS C:154
BINDING SITE FOR RESIDUE SCN C 246
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: FN1_2 (C:198-242|-|-|-|-|-|-|-)
2: FN1_1 (C:200-239|-|-|-|-|-|-|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN1_2
PS51091
Fibronectin type-I domain profile.
FINC_HUMAN
50-90
95-138
139-182
184-228
229-273
306-345
468-511
516-558
559-602
2204-2248
2249-2291
2293-2333
2
-
-
-
-
C:153-197
-
C:198-242
-
-
-
-
-
-
-
2
FN1_1
PS01253
Fibronectin type-I domain signature.
FINC_HUMAN
52-87
97-135
141-179
186-225
231-270
308-342
470-508
518-555
561-599
2206-2245
2251-2288
2295-2330
2
-
-
-
-
C:155-194
-
C:200-239
-
-
-
-
-
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2rkya1 (A:152-197)
1b: SCOP_d2rkyc1 (C:152-197)
1c: SCOP_d2rkyc2 (C:198-241)
1d: SCOP_d2rkya2 (A:198-241)
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)
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)
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)
(
)
Protein Domains
(
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(
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Organisms
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(
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Class
:
Small proteins
(3458)
Fold
:
FnI-like domain
(17)
Superfamily
:
FnI-like domain
(17)
Family
:
Fibronectin type I module
(15)
Protein domain
:
Fibronectin
(12)
Human (Homo sapiens) [TaxId: 9606]
(12)
1a
d2rkya1
A:152-197
1b
d2rkyc1
C:152-197
1c
d2rkyc2
C:198-241
1d
d2rkya2
A:198-241
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_fn1_2rkyC01 (C:200-239)
1b: PFAM_fn1_2rkyC02 (C:200-239)
1c: PFAM_fn1_2rkyC03 (C:200-239)
1d: PFAM_fn1_2rkyC04 (C:200-239)
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)
(
)
Clan
:
no clan defined [family: fn1]
(9)
Family
:
fn1
(9)
Homo sapiens (Human)
(9)
1a
fn1-2rkyC01
C:200-239
1b
fn1-2rkyC02
C:200-239
1c
fn1-2rkyC03
C:200-239
1d
fn1-2rkyC04
C:200-239
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Asym.Unit (47 KB)
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