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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
2RK6
Asym. Unit
Info
Asym.Unit (72 KB)
Biol.Unit 1 (134 KB)
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(1)
Title
:
STRUCTURE OF E163K DJ-1
Authors
:
M. Lakshminarasimhan, M. T. Maldonado, W. Zhou, A. L. Fink, M. A. Wilson
Date
:
16 Oct 07 (Deposition) - 15 Jan 08 (Release) - 19 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.15
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Parkinson'S Disease, Thij, Pfpi, Chaperone, Disease Mutation, Nucleus, Oncogene, Oxidation, Parkinson Disease, Phosphorylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Lakshminarasimhan, M. T. Maldonado, W. Zhou, A. L. Fink, M. A. Wilso
Structural Impact Of Three Parkinsonism-Associated Missense Mutations On Human Dj-1.
Biochemistry V. 47 1381 2008
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 3-SULFINOALANINE (CSDa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSD
1
Mod. Amino Acid
3-SULFINOALANINE
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(10, 10)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_020492 (M26I, chain A, )
02: VAR_072589 (A39S, chain A, )
03: VAR_020493 (E64D, chain A, )
04: VAR_020494 (R98Q, chain A, )
05: VAR_020495 (A104T, chain A, )
06: VAR_020496 (D149A, chain A, )
07: VAR_020497 (G150S, chain A, )
08: VAR_034801 (K163K, chain A, )
09: VAR_020498 (L166P, chain A, )
10: VAR_020499 (A171S, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_020492
M
26
I
PARK7_HUMAN
Disease (PARK7)
---
A
M
26
I
02
UniProt
VAR_072589
A
39
S
PARK7_HUMAN
Disease
---
A
A
39
S
03
UniProt
VAR_020493
E
64
D
PARK7_HUMAN
Disease (PARK7)
---
A
E
64
D
04
UniProt
VAR_020494
R
98
Q
PARK7_HUMAN
Polymorphism
71653619
A
R
98
Q
05
UniProt
VAR_020495
A
104
T
PARK7_HUMAN
Disease (PARK7)
---
A
A
104
T
06
UniProt
VAR_020496
D
149
A
PARK7_HUMAN
Disease (PARK7)
74315352
A
D
149
A
07
UniProt
VAR_020497
G
150
S
PARK7_HUMAN
Polymorphism
---
A
G
150
S
08
UniProt
VAR_034801
E
163
K
PARK7_HUMAN
Polymorphism
---
A
K
163
K
09
UniProt
VAR_020498
L
166
P
PARK7_HUMAN
Disease (PARK7)
28938172
A
L
166
P
10
UniProt
VAR_020499
A
171
S
PARK7_HUMAN
Polymorphism
---
A
A
171
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(6, 6)
Info
All Exons
Exon 1.4a (A:2-30)
Exon 1.5a (A:31-64)
Exon 1.7 (A:65-84)
Exon 1.8a (A:85-108)
Exon 1.10 (A:108-137)
Exon 1.11d (A:137-187)
View:
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All Exon Boundaries
1: Boundary 1.3a/1.4a
2: Boundary 1.4a/1.5a
3: Boundary 1.5a/1.7
4: Boundary 1.7/1.8a
5: Boundary 1.8a/1.10
6: Boundary 1.10/1.11d
7: Boundary 1.11d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000377491
3a
ENSE00001474095
chr1:
8021954-8022141
188
PARK7_HUMAN
-
0
0
-
-
1.4a
ENST00000377491
4a
ENSE00002182513
chr1:
8022823-8022935
113
PARK7_HUMAN
1-30
30
1
A:2-30
29
1.5a
ENST00000377491
5a
ENSE00000737026
chr1:
8025384-8025485
102
PARK7_HUMAN
31-64
34
1
A:31-64
34
1.7
ENST00000377491
7
ENSE00000737024
chr1:
8029405-8029464
60
PARK7_HUMAN
65-84
20
1
A:65-84
20
1.8a
ENST00000377491
8a
ENSE00000737022
chr1:
8030954-8031023
70
PARK7_HUMAN
85-108
24
1
A:85-108
24
1.10
ENST00000377491
10
ENSE00000737020
chr1:
8037712-8037798
87
PARK7_HUMAN
108-137
30
1
A:108-137
30
1.11d
ENST00000377491
11d
ENSE00001474089
chr1:
8044954-8045310
357
PARK7_HUMAN
137-189
53
1
A:137-187
51
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2rk6a_ (A:)
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Classes
(
)
(
)
Folds
(
)
(
)
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Class I glutamine amidotransferase-like
(173)
Family
:
DJ-1/PfpI
(54)
Protein domain
:
DJ-1
(34)
Human (Homo sapiens) [TaxId: 9606]
(34)
1a
d2rk6a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2rk6A00 (A:2-187)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.880, no name defined]
(97)
Human (Homo sapiens)
(27)
1a
2rk6A00
A:2-187
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_DJ_1_PfpI_2rk6A01 (A:32-173)
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Clans
(
)
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Organisms
(
)
(
)
Clan
:
Glutaminase_I
(73)
Family
:
DJ-1_PfpI
(29)
Homo sapiens (Human)
(13)
1a
DJ-1_PfpI-2rk6A01
A:32-173
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Asymmetric Unit 1
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