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2RJE
Biol. Unit 1
Info
Asym.Unit (180 KB)
Biol.Unit 1 (61 KB)
Biol.Unit 2 (62 KB)
Biol.Unit 3 (119 KB)
Biol.Unit 4 (60 KB)
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Title
:
CRYSTAL STRUCTURE OF L3MBTL1 IN COMPLEX WITH H4K20ME2 (RESIDUES 17-25), ORTHORHOMBIC FORM II
Authors
:
A. Allali-Hassani, Y. Liu, N. Herzanych, H. Ouyang, F. Mackenzie, L. Cr P. Loppnau, I. Kozieradzki, M. Vedadi, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, J. R. Min, Structural G Consortium (Sgc)
Date
:
14 Oct 07 (Deposition) - 30 Oct 07 (Release) - 25 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A,B,C,P,Q
Biol. Unit 1: A,Q (1x)
Biol. Unit 2: B,P (1x)
Biol. Unit 3: A,B,P,Q (1x)
Biol. Unit 4: C (1x)
Keywords
:
L(3)Mbt-Like Protein, Structural Genomics, Structural Genomics Consortium, Sgc, Transcription, Chromatin Regulator, Dna-Binding, Metal-Binding, Nucleus, Repressor, Transcription Regulation, Zinc- Finger, Chromosomal Protein, Methylation, Nucleosome Core
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Min, A. Allali-Hassani, N. Nady, C. Qi, H. Ouyang, Y. Liu, F. Mackenzie, M. Vedadi, C. H. Arrowsmith
L3Mbtl1 Recognition Of Mono- And Dimethylated Histones.
Nat. Struct. Mol. Biol. V. 14 1229 2007
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: N-DIMETHYL-LYSINE (MLYa)
2b: N-DIMETHYL-LYSINE (MLYb)
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
MLY
1
Mod. Amino Acid
N-DIMETHYL-LYSINE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:276 , HIS A:279
BINDING SITE FOR RESIDUE CL A 601
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_051098 (I479M, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051098
I
479
M
LMBL1_HUMAN
Polymorphism
6017104
A
I
479
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: MBT (A:206-306,A:314-413,A:422-517)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MBT
PS51079
MBT repeat profile.
LMBL1_HUMAN
206-306
314-413
422-517
3
A:206-306
-
-
A:314-413
-
-
A:422-517
-
-
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Exons
(0, 0)
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SCOP Domains
(0, 0)
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2rjeC01 (C:206-234,C:447-522)
1b: CATH_2rjeA01 (A:206-234,A:447-518)
1c: CATH_2rjeB01 (B:206-234,B:447-518)
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Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.160, no name defined]
(35)
Human (Homo sapiens)
(27)
1a
2rjeC01
C:206-234,C:447-522
1b
2rjeA01
A:206-234,A:447-518
1c
2rjeB01
B:206-234,B:447-518
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Pfam Domains
(1, 9)
Info
all PFAM domains
1a: PFAM_MBT_2rjeC01 (C:453-522)
1b: PFAM_MBT_2rjeC02 (C:453-522)
1c: PFAM_MBT_2rjeC03 (C:453-522)
1d: PFAM_MBT_2rjeC04 (C:453-522)
1e: PFAM_MBT_2rjeC05 (C:453-522)
1f: PFAM_MBT_2rjeC06 (C:453-522)
1g: PFAM_MBT_2rjeC07 (C:453-522)
1h: PFAM_MBT_2rjeC08 (C:453-522)
1i: PFAM_MBT_2rjeC09 (C:453-522)
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Clan
:
Tudor
(88)
Family
:
MBT
(24)
Homo sapiens (Human)
(20)
1a
MBT-2rjeC01
C:453-522
1b
MBT-2rjeC02
C:453-522
1c
MBT-2rjeC03
C:453-522
1d
MBT-2rjeC04
C:453-522
1e
MBT-2rjeC05
C:453-522
1f
MBT-2rjeC06
C:453-522
1g
MBT-2rjeC07
C:453-522
1h
MBT-2rjeC08
C:453-522
1i
MBT-2rjeC09
C:453-522
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Asym.Unit (180 KB)
Header - Asym.Unit
Biol.Unit 1 (61 KB)
Header - Biol.Unit 1
Biol.Unit 2 (62 KB)
Header - Biol.Unit 2
Biol.Unit 3 (119 KB)
Header - Biol.Unit 3
Biol.Unit 4 (60 KB)
Header - Biol.Unit 4
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