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2RIQ
Asym. Unit
Info
Asym.Unit (31 KB)
Biol.Unit 1 (51 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE THIRD ZINC-BINDING DOMAIN OF HUMAN PARP-1
Authors
:
J. M. Pascal, M. F. Langelier, K. M. Servent
Date
:
12 Oct 07 (Deposition) - 08 Jan 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Zn-Binding Domain, Zn Ribbon, Zn Finger, Adp-Ribosylation, Dna Damage, Dna Repair, Dna-Binding, Glycosyltransferase, Metal-Binding, Nad, Nucleus, Phosphorylation, Transferase, Zinc-Finger
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. F. Langelier, K. M. Servent, E. E. Rogers, J. M. Pascal
A Third Zinc-Binding Domain Of Human Poly(Adp-Ribose) Polymerase-1 Coordinates Dna-Dependent Enzyme Activation.
J. Biol. Chem. V. 283 4105 2008
[
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: ETHANOL (EOHa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EOH
1
Ligand/Ion
ETHANOL
2
GOL
3
Ligand/Ion
GLYCEROL
3
ZN
1
Ligand/Ion
ZINC ION
[
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]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:295 , CYS A:298 , CYS A:311 , CYS A:321
BINDING SITE FOR RESIDUE ZN A 1
2
AC2
SOFTWARE
PHE A:339 , ILE A:342 , LEU A:348 , HOH A:379
BINDING SITE FOR RESIDUE EOH A 2
3
AC3
SOFTWARE
LEU A:244 , ASN A:247 , ILE A:248 , LYS A:346 , LYS A:347 , VAL A:350 , HOH A:466 , HOH A:514 , HOH A:517
BINDING SITE FOR RESIDUE GOL A 3
4
AC4
SOFTWARE
ASN A:259 , GLU A:296 , VAL A:323 , PRO A:328 , ASN A:329 , HOH A:393 , HOH A:444
BINDING SITE FOR RESIDUE GOL A 4
5
AC5
SOFTWARE
TRP A:246 , LYS A:249 , ASP A:250 , LYS A:253 , HOH A:537
BINDING SITE FOR RESIDUE GOL A 5
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_019171 (V334I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019171
V
334
I
PARP1_HUMAN
Polymorphism
3219057
A
V
334
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(4, 4)
Info
All Exons
Exon 1.7b (A:225-239)
Exon 1.8 (A:240-278)
Exon 1.9 (A:279-337)
Exon 1.10 (A:338-359)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.6/1.7b
2: Boundary 1.7b/1.8
3: Boundary 1.8/1.9
4: Boundary 1.9/1.10
5: Boundary 1.10/1.11
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000366794
1b
ENSE00001697768
chr1:
226595774-226595511
264
PARP1_HUMAN
1-40
40
0
-
-
1.2a
ENST00000366794
2a
ENSE00000962007
chr1:
226590080-226589915
166
PARP1_HUMAN
41-96
56
0
-
-
1.5b
ENST00000366794
5b
ENSE00000962008
chr1:
226580015-226579900
116
PARP1_HUMAN
96-134
39
0
-
-
1.6
ENST00000366794
6
ENSE00000962009
chr1:
226578325-226578111
215
PARP1_HUMAN
135-206
72
0
-
-
1.7b
ENST00000366794
7b
ENSE00000962010
chr1:
226576456-226576357
100
PARP1_HUMAN
206-239
34
1
A:225-239
15
1.8
ENST00000366794
8
ENSE00000962011
chr1:
226574143-226574027
117
PARP1_HUMAN
240-278
39
1
A:240-278
39
1.9
ENST00000366794
9
ENSE00000962012
chr1:
226573381-226573205
177
PARP1_HUMAN
279-337
59
1
A:279-337
59
1.10
ENST00000366794
10
ENSE00000962013
chr1:
226570884-226570737
148
PARP1_HUMAN
338-387
50
1
A:338-359
22
1.11
ENST00000366794
11
ENSE00000962014
chr1:
226568909-226568769
141
PARP1_HUMAN
387-434
48
0
-
-
1.12
ENST00000366794
12
ENSE00000962015
chr1:
226567865-226567623
243
PARP1_HUMAN
434-515
82
0
-
-
1.13
ENST00000366794
13
ENSE00000962016
chr1:
226567342-226567274
69
PARP1_HUMAN
515-538
24
0
-
-
1.14
ENST00000366794
14
ENSE00000962017
chr1:
226566975-226566843
133
PARP1_HUMAN
538-582
45
0
-
-
1.15
ENST00000366794
15
ENSE00000962018
chr1:
226565004-226564809
196
PARP1_HUMAN
582-647
66
0
-
-
1.16
ENST00000366794
16
ENSE00000962019
chr1:
226562055-226561927
129
PARP1_HUMAN
648-690
43
0
-
-
1.17c
ENST00000366794
17c
ENSE00000962020
chr1:
226558218-226558135
84
PARP1_HUMAN
691-718
28
0
-
-
1.18
ENST00000366794
18
ENSE00000962021
chr1:
226556022-226555900
123
PARP1_HUMAN
719-759
41
0
-
-
1.19a
ENST00000366794
19a
ENSE00000962022
chr1:
226555309-226555181
129
PARP1_HUMAN
760-802
43
0
-
-
1.19c
ENST00000366794
19c
ENSE00000962023
chr1:
226553753-226553655
99
PARP1_HUMAN
803-835
33
0
-
-
1.20b
ENST00000366794
20b
ENSE00000962024
chr1:
226552855-226552703
153
PARP1_HUMAN
836-886
51
0
-
-
1.21b
ENST00000366794
21b
ENSE00000962025
chr1:
226551771-226551644
128
PARP1_HUMAN
887-929
43
0
-
-
1.22
ENST00000366794
22
ENSE00000962026
chr1:
226550861-226550800
62
PARP1_HUMAN
929-950
22
0
-
-
1.23b
ENST00000366794
23b
ENSE00000962027
chr1:
226549784-226549670
115
PARP1_HUMAN
950-988
39
0
-
-
1.24d
ENST00000366794
24d
ENSE00001442633
chr1:
226549242-226548392
851
PARP1_HUMAN
988-1014
27
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PADR1_2riqA01 (A:279-332)
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Clans
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Families
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: PADR1]
(2)
Family
:
PADR1
(2)
Homo sapiens (Human)
(2)
1a
PADR1-2riqA01
A:279-332
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Chain A
Asymmetric Unit 1
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Asym.Unit (31 KB)
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