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2RI8
Biol. Unit 2
Info
Asym.Unit (180 KB)
Biol.Unit 1 (91 KB)
Biol.Unit 2 (86 KB)
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(1)
Title
:
PENICILLIUM CITRINUM ALPHA-1,2-MANNOSIDASE COMPLEX WITH GLYCEROL
Authors
:
Y. D. Lobsanov, T. Yoshida, T. Desmet, W. Nerinckx, P. Yip, M. Claeyssen A. Herscovics, P. L Howell
Date
:
10 Oct 07 (Deposition) - 25 Mar 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.16
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Alternative Conformations, Modulation Of Activity, Glycoprotein, Glycosidase, Hydrolase, Secreted
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. D. Lobsanov, T. Yoshida, T. Desmet, W. Nerinckx, P. Yip, M. Claeyssens, A. Herscovics, P. L. Howell
Modulation Of Activity By Arg407: Structure Of A Fungal Alpha-1, 2-Mannosidase In Complex With A Substrate Analogue.
Acta Crystallogr. , Sect. D V. 64 227 2008
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
GOL
3
Ligand/Ion
GLYCEROL
3
MAN
3
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(11, 11)
Info
All Sites
01: AC9 (SOFTWARE)
02: BC1 (SOFTWARE)
03: BC2 (SOFTWARE)
04: BC3 (SOFTWARE)
05: BC4 (SOFTWARE)
06: BC5 (SOFTWARE)
07: BC6 (SOFTWARE)
08: BC8 (SOFTWARE)
09: CC4 (SOFTWARE)
10: CC5 (SOFTWARE)
11: CC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC9
SOFTWARE
HOH B:247 , HOH B:707 , SER B:2115 , ASP B:2116 , THR B:2117 , ASN B:2182 , THR B:2184 , SER B:2185
BINDING SITE FOR RESIDUE NAG B 2600
02
BC1
SOFTWARE
HOH B:113 , ASP B:2359 , GLU B:2362 , ALA B:2363 , ASN B:2366 , TRP B:2429
BINDING SITE FOR RESIDUE NAG B 2700
03
BC2
SOFTWARE
HOH B:395 , ARG B:2309 , ASP B:2311 , LEU B:2312 , ILE B:2425 , TRP B:2429
BINDING SITE FOR RESIDUE NAG B 2701
04
BC3
SOFTWARE
HOH B:397 , HOH B:562 , HOH B:643
BINDING SITE FOR RESIDUE MAN B 2702
05
BC4
SOFTWARE
HOH B:271
BINDING SITE FOR RESIDUE MAN B 2703
06
BC5
SOFTWARE
HOH B:439
BINDING SITE FOR RESIDUE MAN B 2704
07
BC6
SOFTWARE
HOH B:380 , HOH B:616 , TRP B:2431 , ASN B:2438 , ARG B:2442
BINDING SITE FOR RESIDUE NAG B 2800
08
BC8
SOFTWARE
HOH B:165 , HOH B:166 , HOH B:167 , HOH B:209 , THR B:2501
BINDING SITE FOR RESIDUE CA B 1551
09
CC4
SOFTWARE
HOH B:205 , HOH B:655 , PHE B:2121 , ALA B:2197 , GLY B:2264 , GLY B:2265 , ASP B:2267
BINDING SITE FOR RESIDUE GOL B 2900
10
CC5
SOFTWARE
HOH B:166 , HOH B:205 , HOH B:478 , ARG B:2126 , PHE B:2468 , GLU B:2472 , THR B:2501 , GLU B:2502
BINDING SITE FOR RESIDUE GOL B 2901
11
CC6
SOFTWARE
HOH B:478 , ARG B:2076 , GLU B:2122 , ARG B:2126 , ARG B:2407 , GLU B:2466 , PHE B:2468
BINDING SITE FOR RESIDUE GOL B 2903
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ri8a_ (A:)
1b: SCOP_d2ri8b_ (B:)
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Classes
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Seven-hairpin glycosidases
(13)
Family
:
Class I alpha-1;2-mannosidase, catalytic domain
(13)
Protein domain
:
Class I alpha-1;2-mannosidase, catalytic domain
(13)
Fungus (Penicillium citrinum) [TaxId: 5077]
(5)
1a
d2ri8a_
A:
1b
d2ri8b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2ri8A00 (A:1036-1510)
1b: CATH_2ri8B00 (B:2036-2510)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha/alpha barrel
(251)
Topology
:
Glycosyltransferase
(233)
Homologous Superfamily
:
[code=1.50.10.50, no name defined]
(13)
Penicillium citrinum. Organism_taxid: 5077.
(5)
1a
2ri8A00
A:1036-1510
1b
2ri8B00
B:2036-2510
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Pfam Domains
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Protein & NOT Variant
Protein & NOT Site
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (180 KB)
Header - Asym.Unit
Biol.Unit 1 (91 KB)
Header - Biol.Unit 1
Biol.Unit 2 (86 KB)
Header - Biol.Unit 2
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