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2RI5
Biol. Unit 1
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Asym.Unit (65 KB)
Biol.Unit 1 (60 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE 3-MBT REPEATS FROM HUMAN L3MBTL1 WITH N358A POINT MUTATION
Authors
:
H. Li, D. J. Patel
Date
:
10 Oct 07 (Deposition) - 11 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta Barrel, Alternative Splicing, Chromatin Regulator, Dna- Binding, Metal-Binding, Nucleus, Repressor, Transcription, Transcription Regulation, Zinc, Zinc-Finger
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Li, W. Fischle, W. Wang, E. M. Duncan, L. Liang, S. Murakami-Ishibe, C. D. Allis, D. J. Patel
Structural Basis For Lower Lysine Methylation State-Specific Readout By Mbt Repeats Of L3Mbtl1 And An Engineered Phd Finger.
Mol. Cell V. 28 677 2007
(for further references see the
PDB file header
)
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: (2S)-2-{[(2R)-2-AMINO-2-CARBOXYETH... (CMLa)
1b: (2S)-2-{[(2R)-2-AMINO-2-CARBOXYETH... (CMLb)
2a: DI(HYDROXYETHYL)ETHER (PEGa)
2b: DI(HYDROXYETHYL)ETHER (PEGb)
3a: TRIETHYLENE GLYCOL (PGEa)
3b: TRIETHYLENE GLYCOL (PGEb)
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No.
Name
Count
Type
Full Name
1
CML
2
Mod. Amino Acid
(2S)-2-{[(2R)-2-AMINO-2-CARBOXYETHYL]SULFANYL}BUTANEDIOIC ACID
2
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
3
PGE
2
Ligand/Ion
TRIETHYLENE GLYCOL
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_051098 (I479M, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051098
I
479
M
LMBL1_HUMAN
Polymorphism
6017104
A
I
479
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: MBT (A:422-517)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MBT
PS51079
MBT repeat profile.
LMBL1_HUMAN
206-306
314-413
422-517
3
A:206-306
A:314-413
A:422-517
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Exons
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2ri5a1 (A:206-313)
1b: SCOP_d2ri5a2 (A:314-421)
1c: SCOP_d2ri5a3 (A:422-519)
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Class
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All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Tudor/PWWP/MBT
(72)
Family
:
automated matches
(24)
Protein domain
:
automated matches
(24)
Human (Homo sapiens) [TaxId: 9606]
(20)
1a
d2ri5a1
A:206-313
1b
d2ri5a2
A:314-421
1c
d2ri5a3
A:422-519
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_2ri5A01 (A:206-234,A:447-519)
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Class
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Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.160, no name defined]
(35)
Human (Homo sapiens)
(27)
1a
2ri5A01
A:206-234,A:447-519
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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