PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2RH1
Asym. Unit
Info
Asym.Unit (86 KB)
Biol.Unit 1 (79 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
HIGH RESOLUTION CRYSTAL STRUCTURE OF HUMAN B2-ADRENERGIC G PROTEIN-COUPLED RECEPTOR.
Authors
:
V. Cherezov, D. M. Rosenbaum, M. A. Hanson, S. G. F. Rasmussen, F. S. Thia T. S. Kobilka, H. J. Choi, P. Kuhn, W. I. Weis, B. K. Kobilka, R. C. Steven Accelerated Technologies Center For Gene To 3D Structure (A Gpcr Network (Gpcr)
Date
:
05 Oct 07 (Deposition) - 30 Oct 07 (Release) - 08 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Gpcr, 7Tm, Adrenergic, Fusion, Lipidic Cubic Phase, Lipidic, Mesophase, Cholesterol, Membrane Protein, Membrane Protein - Hydrolase Complex, Structural Genomics, Psi-2, Protein Structure Initiative, Accelerated Technologies Center For Gene To 3D Structure, Atcg3D
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Cherezov, D. M. Rosenbaum, M. A. Hanson, S. G. Rasmussen, F. S. Thian T. S. Kobilka, H. J. Choi, P. Kuhn, W. I. Weis, B. K. Kobilka, R. C. Steven
High-Resolution Crystal Structure Of An Engineered Human Beta2-Adrenergic G Protein-Coupled Receptor.
Science V. 318 1258 2007
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(8, 16)
Info
All Hetero Components
1a: DODECAETHYLENE GLYCOL (12Pa)
2a: ACETAMIDE (ACMa)
3a: 1,4-BUTANEDIOL (BU1a)
3b: 1,4-BUTANEDIOL (BU1b)
4a: (2S)-1-(9H-CARBAZOL-4-YLOXY)-3-(IS... (CAUa)
5a: CHOLESTEROL (CLRa)
5b: CHOLESTEROL (CLRb)
5c: CHOLESTEROL (CLRc)
6a: MALTOSE (MALa)
7a: PALMITIC ACID (PLMa)
8a: SULFATE ION (SO4a)
8b: SULFATE ION (SO4b)
8c: SULFATE ION (SO4c)
8d: SULFATE ION (SO4d)
8e: SULFATE ION (SO4e)
8f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
12P
1
Ligand/Ion
DODECAETHYLENE GLYCOL
2
ACM
1
Ligand/Ion
ACETAMIDE
3
BU1
2
Ligand/Ion
1,4-BUTANEDIOL
4
CAU
1
Ligand/Ion
(2S)-1-(9H-CARBAZOL-4-YLOXY)-3-(ISOPROPYLAMINO)PROPAN-2-OL
5
CLR
3
Ligand/Ion
CHOLESTEROL
6
MAL
1
Ligand/Ion
MALTOSE
7
PLM
1
Ligand/Ion
PALMITIC ACID
8
SO4
6
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:1011 , GLY A:1030 , HIS A:1031 , LEU A:1032 , ASP A:1070 , VAL A:1103 , PHE A:1104 , GLY A:1107 , ARG A:1145
BINDING SITE FOR RESIDUE MAL A 401
02
AC2
SOFTWARE
THR A:66 , VAL A:67 , THR A:68 , ARG A:131 , TYR A:141 , SER A:143
BINDING SITE FOR RESIDUE SO4 A 402
03
AC3
SOFTWARE
PHE A:264 , LYS A:270 , LYS A:273 , ARG A:328
BINDING SITE FOR RESIDUE SO4 A 403
04
AC4
SOFTWARE
PHE A:1114 , THR A:1115 , ASN A:1116 , SER A:1117 , ASN A:1132
BINDING SITE FOR RESIDUE SO4 A 404
05
AC5
SOFTWARE
HOH A:512 , HOH A:526 , THR A:1142 , PRO A:1143 , ASN A:1144 , ARG A:1145
BINDING SITE FOR RESIDUE SO4 A 405
06
AC6
SOFTWARE
ARG A:1095 , TRP A:1126 , THR A:1155
BINDING SITE FOR RESIDUE SO4 A 406
07
AC7
SOFTWARE
ARG A:1014 , LEU A:1015 , LYS A:1016
BINDING SITE FOR RESIDUE SO4 A 407
08
AC8
SOFTWARE
ASP A:113 , PHE A:193 , SER A:203 , SER A:207 , TRP A:286 , PHE A:289 , PHE A:290 , ASN A:293 , TYR A:308 , ASN A:312 , TYR A:316
BINDING SITE FOR RESIDUE CAU A 408
09
AC9
SOFTWARE
PHE A:223 , LYS A:263 , PHE A:264 , HIS A:269
BINDING SITE FOR RESIDUE BU1 A 409
10
BC1
SOFTWARE
LYS A:263 , PHE A:264 , CYS A:265
BINDING SITE FOR RESIDUE ACM A 411
11
BC2
SOFTWARE
TYR A:70 , CYS A:77 , ILE A:112 , ILE A:154 , CLR A:414
BINDING SITE FOR RESIDUE CLR A 412
12
BC3
SOFTWARE
LEU A:339 , HOH A:520
BINDING SITE FOR RESIDUE CLR A 413
13
BC4
SOFTWARE
ILE A:55 , CLR A:412
BINDING SITE FOR RESIDUE CLR A 414
14
BC5
SOFTWARE
LEU A:339 , CYS A:341
BINDING SITE FOR RESIDUE PLM A 415
15
BC6
SOFTWARE
HOH A:538 , ASP A:1072 , VAL A:1075
BINDING SITE FOR RESIDUE 12P A 416
[
close Site info
]
SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_003454 (V34M, chain A, )
2: VAR_009125 (I159F, chain A, )
3: VAR_009124 (I159L, chain A, )
4: VAR_003455 (T164I, chain A, )
5: VAR_025101 (S220C, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_003454
V
34
M
ADRB2_HUMAN
Polymorphism
---
A
V
34
M
2
UniProt
VAR_009125
I
159
F
ADRB2_HUMAN
Polymorphism
---
A
I
159
F
3
UniProt
VAR_009124
I
159
L
ADRB2_HUMAN
Polymorphism
---
A
I
159
L
4
UniProt
VAR_003455
T
164
I
ADRB2_HUMAN
Polymorphism
1800888
A
T
164
I
5
UniProt
VAR_025101
S
220
C
ADRB2_HUMAN
Polymorphism
3729943
A
S
220
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: G_PROTEIN_RECEP_F1_1 (A:119-135)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_PROTEIN_RECEP_F1_1
PS00237
G-protein coupled receptors family 1 signature.
ADRB2_HUMAN
119-135
1
A:119-135
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2rh1A02 (A:1002-1161)
2a: CATH_2rh1A01 (A:29-230,A:263-342)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lysozyme
(1131)
Homologous Superfamily
:
[code=1.10.530.40, no name defined]
(526)
Human, (Homo sapiens, enterobacteria phage t4)
(1)
1a
2rh1A02
A:1002-1161
Architecture
:
Up-down Bundle
(3216)
Topology
:
Rhopdopsin 7-helix transmembrane proteins
(128)
Homologous Superfamily
:
Rhopdopsin 7-helix transmembrane proteins
(128)
Human, (Homo sapiens, enterobacteria phage t4)
(1)
2a
2rh1A01
A:29-230,A:263-342
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_7tm_1_2rh1A01 (A:50-326)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
GPCR_A
(90)
Family
:
7tm_1
(47)
Homo sapiens (Human)
(25)
1a
7tm_1-2rh1A01
A:50-326
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (86 KB)
Header - Asym.Unit
Biol.Unit 1 (79 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2RH1
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
