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2RGN
Asym. Unit
Info
Asym.Unit (275 KB)
Biol.Unit 1 (136 KB)
Biol.Unit 2 (136 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF P63RHOGEF COMPLEX WITH GALPHA-Q AND RHOA
Authors
:
A. Shankaranarayanan, M. R. Nance, J. J. G. Tesmer
Date
:
04 Oct 07 (Deposition) - 15 Jan 08 (Release) - 07 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Heterotrimeric G-Protein, Small Molecular Weight G-Protein, Signaling Complex, Protein-Protein Complex, Rhogef, Rhoa, Galphaq, Galpha-Q, P63Rhogef, Gq, Gtp-Binding, Lipoprotein, Nucleotide-Binding, Palmitate, Transducer, Adp-Ribosylation, Cytoskeleton, Magnesium, Membrane, Methylation, Prenylation, Proto-Oncogene, Signaling Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Lutz, A. Shankaranarayanan, C. Coco, M. Ridilla, M. R. Nance, C. Vettel, D. Baltus, C. R. Evelyn, R. R. Neubig, T. Wieland, J. J. Tesme
Structure Of Galphaq-P63Rhogef-Rhoa Complex Reveals A Pathway For The Activation Of Rhoa By Gpcrs.
Science V. 318 1923 2007
[
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: TETRAFLUOROALUMINATE ION (ALFa)
1b: TETRAFLUOROALUMINATE ION (ALFb)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ALF
2
Ligand/Ion
TETRAFLUOROALUMINATE ION
2
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
3
MG
2
Ligand/Ion
MAGNESIUM ION
[
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]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:48 , GLU A:49 , LYS A:52 , ARG A:183 , PRO A:185 , THR A:186 , GLY A:207 , GLY A:208 , GLN A:209 , GDP A:360 , MG A:362 , HOH A:363 , HOH A:364 , HOH A:365
BINDING SITE FOR RESIDUE ALF A 361
2
AC2
SOFTWARE
SER A:53 , THR A:186 , GDP A:360 , ALF A:361 , HOH A:364 , HOH A:365
BINDING SITE FOR RESIDUE MG A 362
3
AC3
SOFTWARE
GLY D:48 , GLU D:49 , LYS D:52 , ARG D:183 , PRO D:185 , THR D:186 , GLY D:207 , GLY D:208 , GLN D:209 , GDP D:360 , MG D:362 , HOH D:363 , HOH D:364 , HOH D:365
BINDING SITE FOR RESIDUE ALF D 361
4
AC4
SOFTWARE
SER D:53 , THR D:186 , GDP D:360 , ALF D:361 , HOH D:364 , HOH D:365
BINDING SITE FOR RESIDUE MG D 362
5
AC5
SOFTWARE
GLU A:49 , SER A:50 , GLY A:51 , LYS A:52 , SER A:53 , THR A:54 , SER A:156 , LEU A:180 , ARG A:181 , VAL A:182 , ARG A:183 , ASN A:274 , LYS A:275 , ASP A:277 , CYS A:330 , ALA A:331 , THR A:332 , ALF A:361 , MG A:362 , HOH A:364 , HOH A:365
BINDING SITE FOR RESIDUE GDP A 360
6
AC6
SOFTWARE
GLU D:49 , SER D:50 , GLY D:51 , LYS D:52 , SER D:53 , THR D:54 , ASP D:155 , SER D:156 , LEU D:180 , ARG D:181 , VAL D:182 , ARG D:183 , ASN D:274 , LYS D:275 , ASP D:277 , LEU D:278 , CYS D:330 , ALA D:331 , THR D:332 , ALF D:361 , MG D:362 , HOH D:364
BINDING SITE FOR RESIDUE GDP D 360
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_039402 (C253Y, chain B/E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_039402
C
253
Y
ARHGP_HUMAN
Polymorphism
17857333
B/E
C
253
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: DH_2 (B:160-336,E:160-336)
2: PH_DOMAIN (B:348-466,E:348-466)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DH_2
PS50010
Dbl homology (DH) domain profile.
ARHGP_HUMAN
160-336
2
B:160-336
E:160-336
2
PH_DOMAIN
PS50003
PH domain profile.
ARHGP_HUMAN
348-466
2
B:348-466
E:348-466
[
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Exons
(11, 22)
Info
All Exons
Exon 1.6 (B:149-162 | E:150-162)
Exon 1.7 (B:162-184 | E:162-184)
Exon 1.8b (B:185-219 | E:185-219)
Exon 1.8c (B:219-242 | E:219-242)
Exon 1.8f (B:243-272 | E:243-272)
Exon 1.8h (B:273-303 | E:273-303)
Exon 1.9a (B:304-320 | E:304-320)
Exon 1.10 (B:321-346 | E:321-346)
Exon 1.11b (B:347-413 (gaps) | E:347-413 (gaps...)
Exon 1.12b (B:414-474 | E:414-474)
Exon 1.13a (B:474-490 | E:474-490)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.5/1.6
02: Boundary 1.6/1.7
03: Boundary 1.7/1.8b
04: Boundary 1.8b/1.8c
05: Boundary 1.8c/1.8f
06: Boundary 1.8f/1.8h
07: Boundary 1.8h/1.9a
08: Boundary 1.9a/1.10
09: Boundary 1.10/1.11b
10: Boundary 1.11b/1.12b
11: Boundary 1.12b/1.13a
12: Boundary 1.13a/1.14b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3
ENST00000286494
3
ENSE00001747459
chr12:
58005218-58005774
557
ARHGP_HUMAN
1-33
33
0
-
-
1.4
ENST00000286494
4
ENSE00001611343
chr12:
58006713-58006927
215
ARHGP_HUMAN
33-104
72
0
-
-
1.5
ENST00000286494
5
ENSE00001598974
chr12:
58007047-58007142
96
ARHGP_HUMAN
105-136
32
0
-
-
1.6
ENST00000286494
6
ENSE00001023908
chr12:
58007223-58007299
77
ARHGP_HUMAN
137-162
26
2
B:149-162
E:150-162
14
13
1.7
ENST00000286494
7
ENSE00001023885
chr12:
58007477-58007543
67
ARHGP_HUMAN
162-184
23
2
B:162-184
E:162-184
23
23
1.8b
ENST00000286494
8b
ENSE00001023901
chr12:
58007799-58007902
104
ARHGP_HUMAN
185-219
35
2
B:185-219
E:185-219
35
35
1.8c
ENST00000286494
8c
ENSE00001023880
chr12:
58008114-58008183
70
ARHGP_HUMAN
219-242
24
2
B:219-242
E:219-242
24
24
1.8f
ENST00000286494
8f
ENSE00001023864
chr12:
58008299-58008388
90
ARHGP_HUMAN
243-272
30
2
B:243-272
E:243-272
30
30
1.8h
ENST00000286494
8h
ENSE00001023914
chr12:
58008472-58008564
93
ARHGP_HUMAN
273-303
31
2
B:273-303
E:273-303
31
31
1.9a
ENST00000286494
9a
ENSE00001023925
chr12:
58008750-58008800
51
ARHGP_HUMAN
304-320
17
2
B:304-320
E:304-320
17
17
1.10
ENST00000286494
10
ENSE00001023873
chr12:
58009020-58009097
78
ARHGP_HUMAN
321-346
26
2
B:321-346
E:321-346
26
26
1.11b
ENST00000286494
11b
ENSE00001023896
chr12:
58009295-58009495
201
ARHGP_HUMAN
347-413
67
2
B:347-413 (gaps)
E:347-413 (gaps)
67
67
1.12b
ENST00000286494
12b
ENSE00001023904
chr12:
58009620-58009800
181
ARHGP_HUMAN
414-474
61
2
B:414-474
E:414-474
61
61
1.13a
ENST00000286494
13a
ENSE00001023870
chr12:
58010067-58010278
212
ARHGP_HUMAN
474-544
71
2
B:474-490
E:474-490
17
17
1.14b
ENST00000286494
14b
ENSE00001477514
chr12:
58010567-58011026
460
ARHGP_HUMAN
545-580
36
0
-
-
[
close EXON info
]
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d2rgna1 (A:67-183)
1b: SCOP_d2rgnd1 (D:67-183)
2a: SCOP_d2rgnc1 (C:4-180)
2b: SCOP_d2rgnf1 (F:5-180)
3a: SCOP_d2rgna2 (A:38-66,A:184-354)
3b: SCOP_d2rgnd2 (D:38-66,D:184-354)
View:
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)
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(
)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Transducin (alpha subunit), insertion domain
(49)
Superfamily
:
Transducin (alpha subunit), insertion domain
(49)
Family
:
Transducin (alpha subunit), insertion domain
(49)
Protein domain
:
Transducin (alpha subunit), insertion domain
(49)
Mouse (Mus musculus) [TaxId: 10090]
(5)
1a
d2rgna1
A:67-183
1b
d2rgnd1
D:67-183
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
RhoA
(19)
Human (Homo sapiens) [TaxId: 9606]
(19)
2a
d2rgnc1
C:4-180
2b
d2rgnf1
F:5-180
Protein domain
:
Transducin (alpha subunit)
(51)
Mouse (Mus musculus) [TaxId: 10090]
(5)
3a
d2rgna2
A:38-66,A:184-354
3b
d2rgnd2
D:38-66,D:184-354
[
close SCOP info
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CATH Domains
(4, 10)
Info
all CATH domains
1a: CATH_2rgnC00 (C:4-180)
1b: CATH_2rgnF00 (F:5-180)
1c: CATH_2rgnA01 (A:35-67,A:186-358)
1d: CATH_2rgnD01 (D:35-67,D:186-358)
2a: CATH_2rgnA02 (A:68-185)
2b: CATH_2rgnD02 (D:68-185)
3a: CATH_2rgnE01 (E:150-352)
3b: CATH_2rgnB01 (B:149-352)
4a: CATH_2rgnB02 (B:353-490)
4b: CATH_2rgnE02 (E:353-490)
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(
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)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
House mouse (Mus musculus)
(47)
1a
2rgnC00
C:4-180
1b
2rgnF00
F:5-180
1c
2rgnA01
A:35-67,A:186-358
1d
2rgnD01
D:35-67,D:186-358
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
GI Alpha 1, domain 2-like
(67)
Homologous Superfamily
:
GI Alpha 1, domain 2-like
(66)
House mouse (Mus musculus)
(4)
2a
2rgnA02
A:68-185
2b
2rgnD02
D:68-185
Architecture
:
Up-down Bundle
(3216)
Topology
:
Dbl Homology Domain; Chain A
(13)
Homologous Superfamily
:
Dbl Homology Domain; Chain A
(13)
House mouse (Mus musculus)
(7)
3a
2rgnE01
E:150-352
3b
2rgnB01
B:149-352
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
PH-domain like
(150)
Homologous Superfamily
:
Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
(147)
House mouse (Mus musculus)
(39)
4a
2rgnB02
B:353-490
4b
2rgnE02
E:353-490
[
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_G_alpha_2rgnD01 (D:37-358)
1b: PFAM_G_alpha_2rgnD02 (D:37-358)
2a: PFAM_Ras_2rgnF01 (F:7-180)
2b: PFAM_Ras_2rgnF02 (F:7-180)
3a: PFAM_RhoGEF_2rgnE01 (E:164-335)
3b: PFAM_RhoGEF_2rgnE02 (E:164-335)
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Families
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Organisms
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Clan
:
P-loop_NTPase
(1112)
Family
:
G-alpha
(24)
Mus musculus (Mouse)
(5)
1a
G-alpha-2rgnD01
D:37-358
1b
G-alpha-2rgnD02
D:37-358
Family
:
Ras
(176)
Homo sapiens (Human)
(141)
2a
Ras-2rgnF01
F:7-180
2b
Ras-2rgnF02
F:7-180
Clan
:
no clan defined [family: RhoGEF]
(22)
Family
:
RhoGEF
(22)
Homo sapiens (Human)
(16)
3a
RhoGEF-2rgnE01
E:164-335
3b
RhoGEF-2rgnE02
E:164-335
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